Wall clock time and date at job start Sun Mar 29 2020 21:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48505 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46931 * 299.99422 * 3 2 1 6 6 H 1.48494 * 109.47478 * 59.99803 * 3 2 1 7 7 C 1.37881 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00256 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00141 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47375 * 180.02562 * 11 10 9 13 13 C 1.38627 * 120.80410 * 104.99472 * 12 11 10 14 14 C 1.38195 * 119.19489 * 180.02562 * 13 12 11 15 15 N 1.31875 * 120.81767 * 0.02562 * 14 13 12 16 16 C 1.31842 * 121.75256 * 359.97438 * 15 14 13 17 17 C 1.38463 * 120.72564 * 359.97438 * 16 15 14 18 18 F 1.35104 * 120.44484 * 179.97438 * 17 16 15 19 19 H 0.97002 * 120.00623 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47281 * 59.99705 * 9 7 2 21 21 H 1.09001 * 109.47348 * 300.00212 * 9 7 2 22 22 H 1.00902 * 111.00059 * 56.05127 * 10 9 7 23 23 H 1.09000 * 109.47153 * 59.99745 * 11 10 9 24 24 H 1.09006 * 109.47051 * 299.99862 * 11 10 9 25 25 H 1.08005 * 120.40564 * 0.05027 * 13 12 11 26 26 H 1.07998 * 119.58847 * 179.72759 * 14 13 12 27 27 H 1.07999 * 119.63475 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2057 -3.6157 0.0027 11 6 1.5054 -4.9071 0.0032 12 6 2.5149 -6.0259 0.0049 13 6 2.7609 -6.7585 1.1558 14 6 3.6941 -7.7771 1.1200 15 7 4.3479 -8.0556 0.0091 16 6 4.1414 -7.3816 -1.1050 17 6 3.2210 -6.3480 -1.1463 18 9 3.0144 -5.6606 -2.2910 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6248 -2.5564 0.8919 22 1 2.8405 -3.5480 0.7841 23 1 0.8808 -4.9821 -0.8869 24 1 0.8802 -4.9810 0.8931 25 1 2.2293 -6.5361 2.0694 26 1 3.8939 -8.3489 2.0141 27 1 4.6964 -7.6385 -1.9952 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308725738.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:44 Heat of formation + Delta-G solvation = -15.345546 kcal Electronic energy + Delta-G solvation = -13036.232593 eV Core-core repulsion = 10515.272313 eV Total energy + Delta-G solvation = -2520.960279 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.65787 -39.98234 -35.81450 -33.12832 -31.69416 -30.77578 -27.48621 -24.89181 -23.45313 -21.98056 -21.34730 -17.37968 -17.23482 -16.74330 -15.99964 -15.59089 -14.73868 -14.33713 -14.15912 -13.64585 -13.50411 -13.16759 -13.12796 -12.16188 -12.09654 -11.38690 -11.31215 -10.77265 -10.73037 -10.10016 -9.61218 -9.58610 -9.22301 -8.86488 -8.53443 -7.45033 -6.07866 -4.10049 0.97357 1.10720 3.28942 3.36283 3.41645 3.64290 4.15419 4.39563 4.44476 4.66384 4.74676 4.92138 5.28312 5.36420 5.43106 5.63672 5.83730 5.87269 6.04076 6.21006 6.66957 7.12197 7.30972 7.70825 7.79598 8.03983 8.25599 8.48737 8.98597 9.55070 11.03295 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.054310 B = 0.006317 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.438085 B = 4431.589720 C = 4521.842983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.681 5.681 11 C 0.093 3.907 12 C -0.065 4.065 13 C -0.142 4.142 14 C 0.080 3.920 15 N -0.466 5.466 16 C 0.064 3.936 17 C 0.074 3.926 18 F -0.118 7.118 19 H 0.262 0.738 20 H 0.031 0.969 21 H -0.011 1.011 22 H 0.331 0.669 23 H 0.081 0.919 24 H 0.038 0.962 25 H 0.142 0.858 26 H 0.160 0.840 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 -13.534 1.510 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.312 5.312 11 C -0.036 4.036 12 C -0.074 4.074 13 C -0.162 4.162 14 C -0.077 4.077 15 N -0.174 5.174 16 C -0.094 4.094 17 C 0.052 3.948 18 F -0.096 7.096 19 H 0.071 0.929 20 H 0.049 0.951 21 H 0.007 0.993 22 H 0.147 0.853 23 H 0.100 0.900 24 H 0.056 0.944 25 H 0.159 0.841 26 H 0.177 0.823 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.242 -14.034 0.776 15.001 hybrid contribution -0.664 1.746 0.716 2.001 sum 4.578 -12.288 1.492 13.197 Atomic orbital electron populations 1.69965 1.06097 1.26802 1.50824 1.24988 0.94898 0.99432 0.95227 0.86402 0.80070 0.83175 0.77539 1.19620 1.20925 1.21053 1.21187 0.93592 0.90059 1.50482 0.91849 1.19602 0.90496 0.87067 0.96023 1.60738 1.21177 1.00238 1.49049 1.20846 0.92895 0.88273 1.01589 1.20711 0.97379 0.97177 0.92154 1.22079 0.99406 0.96302 0.98407 1.22729 0.92939 0.95742 0.96301 1.67663 1.24025 1.26833 0.98892 1.22861 0.96435 0.92465 0.97685 1.18680 0.98756 0.93859 0.83486 1.91566 1.93547 1.77898 1.46604 0.92886 0.95132 0.99334 0.85299 0.90033 0.94355 0.84060 0.82272 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.98 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 15 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.51 -14.60 9.32 -34.44 -0.32 -14.93 15 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 15 9 C 0.19 5.06 5.44 -4.98 -0.03 5.04 15 10 N -0.68 -14.62 6.48 -116.34 -0.75 -15.37 15 11 C 0.09 1.63 5.59 -4.98 -0.03 1.61 15 12 C -0.06 -0.98 5.44 -104.26 -0.57 -1.55 15 13 C -0.14 -1.72 9.77 -39.45 -0.39 -2.11 15 14 C 0.08 0.91 11.18 -17.55 -0.20 0.72 15 15 N -0.47 -6.15 10.36 -13.20 -0.14 -6.28 15 16 C 0.06 0.84 11.17 -17.46 -0.20 0.65 15 17 C 0.07 1.13 7.29 -39.28 -0.29 0.85 15 18 F -0.12 -2.02 16.88 2.25 0.04 -1.98 15 19 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 20 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 21 H -0.01 -0.30 8.14 -51.93 -0.42 -0.72 15 22 H 0.33 6.78 8.72 -39.29 -0.34 6.44 15 23 H 0.08 1.48 8.13 -51.93 -0.42 1.06 15 24 H 0.04 0.63 8.01 -51.93 -0.42 0.21 15 25 H 0.14 1.40 8.05 -52.48 -0.42 0.98 15 26 H 0.16 1.29 8.06 -52.49 -0.42 0.87 15 27 H 0.16 1.73 8.06 -52.49 -0.42 1.31 15 LS Contribution 249.95 15.07 3.77 3.77 Total: -1.00 -30.91 249.95 -6.31 -37.22 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -2.84 Total: 0.17 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.10 Total: -8.22 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.15 Total: -47.63 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.91 -6.31 -37.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308725738.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.873 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds