Wall clock time and date at job start Sun Mar 29 2020 21:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48505 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46931 * 299.99422 * 3 2 1 6 6 H 1.48494 * 109.47478 * 59.99803 * 3 2 1 7 7 C 1.37881 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00256 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00141 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47375 * 180.02562 * 11 10 9 13 13 C 1.38627 * 120.80410 * 104.99472 * 12 11 10 14 14 C 1.38195 * 119.19489 * 180.02562 * 13 12 11 15 15 N 1.31875 * 120.81767 * 0.02562 * 14 13 12 16 16 C 1.31842 * 121.75256 * 359.97438 * 15 14 13 17 17 C 1.38463 * 120.72564 * 359.97438 * 16 15 14 18 18 F 1.35104 * 120.44484 * 179.97438 * 17 16 15 19 19 H 0.97002 * 120.00623 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47281 * 59.99705 * 9 7 2 21 21 H 1.09001 * 109.47348 * 300.00212 * 9 7 2 22 22 H 1.00902 * 111.00059 * 56.05127 * 10 9 7 23 23 H 1.09000 * 109.47153 * 59.99745 * 11 10 9 24 24 H 1.09006 * 109.47051 * 299.99862 * 11 10 9 25 25 H 1.08005 * 120.40564 * 0.05027 * 13 12 11 26 26 H 1.07998 * 119.58847 * 179.72759 * 14 13 12 27 27 H 1.07999 * 119.63475 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2057 -3.6157 0.0027 11 6 1.5054 -4.9071 0.0032 12 6 2.5149 -6.0259 0.0049 13 6 2.7609 -6.7585 1.1558 14 6 3.6941 -7.7771 1.1200 15 7 4.3479 -8.0556 0.0091 16 6 4.1414 -7.3816 -1.1050 17 6 3.2210 -6.3480 -1.1463 18 9 3.0144 -5.6606 -2.2910 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6248 -2.5564 0.8919 22 1 2.8405 -3.5480 0.7841 23 1 0.8808 -4.9821 -0.8869 24 1 0.8802 -4.9810 0.8931 25 1 2.2293 -6.5361 2.0694 26 1 3.8939 -8.3489 2.0141 27 1 4.6964 -7.6385 -1.9952 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308725738.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:44 Heat of formation + Delta-G solvation = -37.104189 kcal Electronic energy + Delta-G solvation = -13037.176119 eV Core-core repulsion = 10515.272313 eV Total energy + Delta-G solvation = -2521.903805 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.88374 -41.02159 -37.44943 -34.97778 -33.27763 -31.80363 -29.28685 -26.54996 -24.48623 -23.72403 -22.83821 -18.84494 -18.43640 -18.24069 -17.38177 -16.84043 -16.62419 -15.98631 -15.24311 -15.11655 -14.94926 -14.53103 -14.32417 -13.89876 -13.57500 -13.18850 -12.84792 -12.63504 -12.54524 -12.08296 -11.39373 -10.71073 -10.68275 -10.63579 -9.92699 -9.23730 -8.25684 -6.36885 -0.03397 0.01744 1.39993 1.41215 1.54894 2.38087 2.63025 3.08020 3.10413 3.37552 3.54344 3.62880 3.82819 3.95722 4.38112 4.46511 4.58161 4.79768 4.89233 4.99215 5.11574 5.20538 5.56442 5.64845 5.95880 6.33355 6.60962 6.80678 6.82420 7.33974 8.86092 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.054310 B = 0.006317 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.438085 B = 4431.589720 C = 4521.842983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.684 5.684 11 C 0.097 3.903 12 C -0.081 4.081 13 C -0.133 4.133 14 C 0.091 3.909 15 N -0.476 5.476 16 C 0.069 3.931 17 C 0.047 3.953 18 F -0.138 7.138 19 H 0.266 0.734 20 H 0.000 1.000 21 H -0.029 1.029 22 H 0.337 0.663 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.167 0.833 26 H 0.200 0.800 27 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -14.148 2.624 15.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.315 5.315 11 C -0.032 4.032 12 C -0.090 4.090 13 C -0.153 4.153 14 C -0.066 4.066 15 N -0.184 5.184 16 C -0.088 4.088 17 C 0.026 3.974 18 F -0.116 7.116 19 H 0.075 0.925 20 H 0.018 0.982 21 H -0.012 1.012 22 H 0.155 0.845 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.185 0.815 26 H 0.217 0.783 27 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.566 -14.675 1.891 16.188 hybrid contribution -1.078 1.819 0.414 2.155 sum 5.488 -12.856 2.305 14.167 Atomic orbital electron populations 1.70081 1.07742 1.28062 1.51361 1.25937 0.95811 1.03351 0.94469 0.85267 0.78848 0.78229 0.77837 1.18817 1.20439 1.20021 1.21529 0.93754 0.91374 1.50842 0.91931 1.19228 0.90510 0.88440 0.93634 1.60540 1.20648 1.00784 1.49560 1.20771 0.93612 0.87315 1.01510 1.20580 0.97569 0.97285 0.93555 1.22357 0.99261 0.95596 0.98110 1.23384 0.91309 0.94978 0.96922 1.67780 1.24448 1.26870 0.99331 1.23145 0.95638 0.91426 0.98633 1.18984 1.00275 0.95067 0.83121 1.91511 1.93884 1.78558 1.47666 0.92501 0.98167 1.01175 0.84541 0.91535 0.92937 0.81507 0.78336 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.89 15 2 C 0.00 0.16 5.46 84.66 0.46 0.62 15 3 Si 0.97 44.39 29.54 68.60 2.03 46.42 15 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 15 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 7 C -0.54 -30.84 9.32 25.60 0.24 -30.61 15 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 15 9 C 0.21 11.24 5.44 85.56 0.47 11.71 15 10 N -0.68 -29.80 6.48 -521.99 -3.38 -33.18 15 11 C 0.10 3.42 5.59 85.55 0.48 3.90 15 12 C -0.08 -2.36 5.44 -19.63 -0.11 -2.46 15 13 C -0.13 -2.87 9.77 22.35 0.22 -2.65 15 14 C 0.09 1.75 11.18 84.68 0.95 2.69 15 15 N -0.48 -11.24 10.36 -195.66 -2.03 -13.27 15 16 C 0.07 1.72 11.17 84.74 0.95 2.67 15 17 C 0.05 1.43 7.29 22.47 0.16 1.59 15 18 F -0.14 -4.83 16.88 44.97 0.76 -4.07 15 19 H 0.27 14.96 8.31 -92.71 -0.77 14.19 15 20 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 15 21 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 15 22 H 0.34 13.81 8.72 -89.69 -0.78 13.03 15 23 H 0.07 2.51 8.13 -2.39 -0.02 2.49 15 24 H 0.05 1.70 8.01 -2.38 -0.02 1.68 15 25 H 0.17 2.71 8.05 -2.91 -0.02 2.68 15 26 H 0.20 2.21 8.06 -2.91 -0.02 2.18 15 27 H 0.19 3.60 8.06 -2.91 -0.02 3.58 15 Total: -1.00 -66.72 249.95 1.87 -64.84 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.40 Total: 7.70 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 3.81 Total: -12.54 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -5.12 Total: -102.34 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.76 Total: -4.07 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.72 1.87 -64.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308725738.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.739 kcal (2) G-P(sol) polarization free energy of solvation -66.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds