Wall clock time and date at job start Sun Mar 29 2020 21:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00351 * 2 1 4 4 H 1.48499 * 109.47209 * 270.00052 * 3 2 1 5 5 H 1.48496 * 109.46919 * 30.00094 * 3 2 1 6 6 H 1.48498 * 109.47270 * 150.00134 * 3 2 1 7 7 C 1.37882 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47206 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47215 * 180.02562 * 10 9 7 12 12 C 1.35309 * 125.87027 * 124.97307 * 11 10 9 13 13 C 1.35353 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.50706 * 126.75076 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.46816 * 124.99944 * 14 13 12 16 16 N 1.46900 * 109.47098 * 179.97438 * 15 14 13 17 17 N 1.33775 * 106.49785 * 359.97438 * 13 12 11 18 18 N 1.28637 * 108.88137 * 0.02562 * 17 13 12 19 19 H 0.96999 * 119.99613 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46993 * 59.99691 * 9 7 2 21 21 H 1.09007 * 109.46996 * 299.99902 * 9 7 2 22 22 H 1.08997 * 109.46834 * 59.99655 * 10 9 7 23 23 H 1.09007 * 109.46928 * 299.99779 * 10 9 7 24 24 H 1.08002 * 126.91313 * 0.02562 * 12 11 10 25 25 H 1.08997 * 109.46870 * 244.99788 * 14 13 12 26 26 H 1.09004 * 109.46999 * 5.00398 * 14 13 12 27 27 H 1.09009 * 109.47321 * 300.00034 * 15 14 13 28 28 H 1.09003 * 109.47413 * 60.00146 * 15 14 13 29 29 H 1.00908 * 110.99945 * 56.04818 * 16 15 14 30 30 H 1.00902 * 111.00334 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 7 1.5126 -4.9309 -0.0032 12 6 1.6614 -5.9311 -0.9022 13 6 0.7977 -6.9044 -0.5298 14 6 0.5838 -8.2302 -1.2138 15 6 0.7785 -9.3625 -0.2034 16 7 0.5693 -10.6548 -0.8699 17 7 0.1715 -6.4582 0.5648 18 7 0.6174 -5.2860 0.8508 19 1 -0.4849 0.8401 0.0004 20 1 0.6246 -2.5563 -0.8919 21 1 0.6239 -2.5575 0.8881 22 1 2.8711 -3.6048 0.8890 23 1 2.8725 -3.6041 -0.8910 24 1 2.3346 -5.9495 -1.7466 25 1 -0.4284 -8.2723 -1.6160 26 1 1.3025 -8.3403 -2.0258 27 1 1.7907 -9.3204 0.1990 28 1 0.0598 -9.2525 0.6087 29 1 1.1801 -10.7536 -1.6670 30 1 0.6928 -11.4194 -0.2232 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327263790.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:31 Heat of formation + Delta-G solvation = 53.216270 kcal Electronic energy + Delta-G solvation = -13155.834530 eV Core-core repulsion = 10793.600370 eV Total energy + Delta-G solvation = -2362.234160 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.15522 -37.16260 -36.22287 -34.71961 -32.76694 -31.75835 -28.89343 -27.33703 -24.44900 -23.57834 -22.70859 -21.21099 -18.88972 -17.68498 -17.36568 -16.74339 -16.45275 -16.15288 -15.55736 -15.14565 -14.78017 -14.42444 -13.69664 -13.67494 -13.18404 -12.91775 -12.62565 -12.58648 -12.28341 -12.21606 -11.92524 -11.55049 -11.44022 -10.85900 -10.63600 -10.07219 -9.59262 -8.27013 -6.41717 0.76287 1.41612 1.43874 1.54586 1.57941 1.62656 2.39286 3.08456 3.39103 3.69359 3.85708 4.10221 4.20281 4.25859 4.33773 4.44155 4.56081 4.63023 4.87130 5.07810 5.23622 5.29432 5.33962 5.46007 5.60379 5.79135 6.04504 6.23730 6.66932 6.75043 7.29840 7.61941 8.85720 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.104791 B = 0.005093 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 267.134015 B = 5496.069966 C = 5588.539915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.022 3.978 10 C 0.125 3.875 11 N -0.280 5.280 12 C -0.042 4.042 13 C -0.040 4.040 14 C -0.019 4.019 15 C 0.074 3.926 16 N -0.854 5.854 17 N -0.308 5.308 18 N -0.132 5.132 19 H 0.265 0.735 20 H -0.008 1.008 21 H -0.005 1.005 22 H 0.100 0.900 23 H 0.132 0.868 24 H 0.232 0.768 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.028 0.972 28 H 0.055 0.945 29 H 0.351 0.649 30 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 -14.836 -5.008 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.179 1.179 7 C -0.582 4.582 8 H 0.100 0.900 9 C -0.016 4.016 10 C 0.006 3.994 11 N -0.073 5.073 12 C -0.194 4.194 13 C -0.181 4.181 14 C -0.059 4.059 15 C -0.057 4.057 16 N -0.386 5.386 17 N -0.174 5.174 18 N -0.110 5.110 19 H 0.074 0.926 20 H 0.010 0.990 21 H 0.013 0.987 22 H 0.118 0.882 23 H 0.150 0.850 24 H 0.249 0.751 25 H 0.097 0.903 26 H 0.128 0.872 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.165 0.835 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.381 -14.018 -3.830 15.871 hybrid contribution 1.365 0.781 -0.395 1.622 sum 7.746 -13.237 -4.224 15.908 Atomic orbital electron populations 1.70145 1.08317 1.28142 1.50782 1.26070 0.95660 1.03908 0.94225 0.85291 0.78618 0.77573 0.78619 1.19471 1.21435 1.17943 1.21467 0.94190 0.90710 1.51814 0.89989 1.19159 0.94287 0.92463 0.95704 1.22502 0.94147 0.76799 1.05945 1.47897 1.25732 1.15795 1.17912 1.24189 1.06205 0.88755 1.00276 1.22495 0.98527 1.00342 0.96711 1.19834 1.03951 0.85249 0.96842 1.21527 0.98933 0.89084 0.96153 1.58655 1.62951 1.03396 1.13580 1.74952 1.23103 1.03505 1.15799 1.78318 1.05877 1.09581 1.17250 0.92644 0.99003 0.98702 0.88204 0.84958 0.75121 0.90278 0.87199 0.95425 0.92630 0.83537 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.98 42.18 29.54 68.60 2.03 44.21 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.54 -28.73 9.11 25.60 0.23 -28.49 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.02 1.12 5.10 29.85 0.15 1.27 16 10 C 0.13 4.64 6.39 86.38 0.55 5.19 16 11 N -0.28 -10.48 3.44 -347.73 -1.20 -11.68 16 12 C -0.04 -1.21 11.49 83.49 0.96 -0.25 16 13 C -0.04 -1.23 6.50 41.60 0.27 -0.96 16 14 C -0.02 -0.42 6.05 29.85 0.18 -0.24 16 15 C 0.07 1.55 6.76 86.30 0.58 2.14 16 16 N -0.85 -13.53 9.62 -186.71 -1.80 -15.33 16 17 N -0.31 -12.41 12.40 -48.59 -0.60 -13.01 16 18 N -0.13 -5.81 12.92 37.02 0.48 -5.33 16 19 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 20 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 21 H -0.01 -0.32 8.12 -2.38 -0.02 -0.34 16 22 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 23 H 0.13 3.87 8.07 -2.38 -0.02 3.85 16 24 H 0.23 4.01 8.06 -2.91 -0.02 3.99 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.11 1.58 8.12 -2.39 -0.02 1.56 16 27 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.35 3.98 8.99 -89.69 -0.81 3.18 16 30 H 0.35 4.51 9.08 -89.69 -0.81 3.70 16 Total: -1.00 -71.46 266.60 2.12 -69.35 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -0.47 Total: 8.99 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 3.39 Total: -20.88 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -2.83 Total: -101.66 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -71.46 2.12 -69.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327263790.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.562 kcal (2) G-P(sol) polarization free energy of solvation -71.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds