Wall clock time and date at job start Sun Mar 29 2020 22:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40061 * 125.94445 * 2 1 4 4 C 1.31917 * 108.22015 * 179.97438 * 3 2 1 5 5 C 1.47616 * 125.98442 * 179.97438 * 4 3 2 6 6 O 1.21615 * 120.00082 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00072 * 0.02562 * 5 4 3 8 8 C 1.36915 * 119.99864 * 179.97438 * 7 5 4 9 9 H 1.07995 * 120.00067 * 359.72767 * 8 7 5 10 10 C 1.39023 * 119.99723 * 179.97438 * 8 7 5 11 11 N 1.31380 * 119.99840 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99654 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47028 * 60.00944 * 12 10 8 14 14 H 1.48503 * 109.46851 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47412 * 300.00553 * 12 10 8 16 16 C 1.41091 * 108.02917 * 0.25657 * 4 3 2 17 17 C 1.35577 * 107.79750 * 359.56801 * 16 4 3 18 18 O 1.35774 * 126.07903 * 180.15554 * 17 16 4 19 19 H 1.08995 * 109.46878 * 90.03215 * 1 2 3 20 20 H 1.09005 * 109.46717 * 210.02862 * 1 2 3 21 21 H 1.09000 * 109.47232 * 330.02698 * 1 2 3 22 22 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 23 23 H 0.97005 * 119.99761 * 179.97438 * 11 10 8 24 24 H 1.08004 * 126.10401 * 179.74464 * 16 4 3 25 25 H 0.96703 * 113.99877 * 270.32424 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1339 0.0000 4 6 3.5437 0.7323 0.0006 5 6 4.7335 1.6060 0.0002 6 8 5.8470 1.1171 0.0003 7 7 4.5859 2.9457 -0.0002 8 6 5.6894 3.7560 0.0000 9 1 6.6782 3.3218 0.0050 10 6 5.5371 5.1379 -0.0010 11 7 4.3341 5.6661 -0.0016 12 14 7.0428 6.2435 0.0001 13 1 7.8573 5.9716 -1.2115 14 1 6.6131 7.6650 -0.0006 15 1 7.8548 5.9729 1.2135 16 6 3.5512 -0.6786 -0.0051 17 6 2.2626 -1.0999 0.0007 18 8 1.8436 -2.3913 0.0010 19 1 -0.3633 -0.0006 -1.0276 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3634 0.8902 0.5134 22 1 3.6977 3.3357 -0.0007 23 1 4.2278 6.6303 -0.0019 24 1 4.4272 -1.3103 -0.0100 25 1 1.7226 -2.7658 -0.8823 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327831049.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:26 Heat of formation + Delta-G solvation = 2.747500 kcal Electronic energy + Delta-G solvation = -13349.020439 eV Core-core repulsion = 10751.046032 eV Total energy + Delta-G solvation = -2597.974407 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.93256 -37.95257 -36.95829 -34.01763 -32.88900 -31.28281 -28.91119 -27.01346 -25.03574 -22.17411 -21.08171 -19.19017 -18.21826 -17.73682 -16.31883 -15.66041 -14.97408 -14.60794 -14.16323 -13.96439 -13.76480 -13.48376 -12.72303 -12.53544 -12.12064 -11.62272 -11.50144 -11.08945 -10.46353 -10.38123 -10.16323 -9.58807 -8.88787 -8.63078 -8.31242 -8.03671 -6.50329 -3.85942 1.79668 2.47154 2.61770 3.24055 3.24373 3.28729 3.98082 4.17448 4.38170 4.67601 4.99659 5.17613 5.33015 5.42072 5.53815 5.85783 6.14929 6.34320 6.63703 6.88530 7.47234 7.60989 7.80916 8.02927 8.56408 9.08724 9.48125 10.00941 10.65906 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.061651 B = 0.007247 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.064077 B = 3862.659557 C = 4299.026086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.387 5.387 3 N -0.255 5.255 4 C 0.076 3.924 5 C 0.498 3.502 6 O -0.588 6.588 7 N -0.528 5.528 8 C -0.299 4.299 9 H 0.109 0.891 10 C 0.026 3.974 11 N -0.884 5.884 12 Si 0.937 3.063 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.271 1.271 16 C -0.227 4.227 17 C 0.238 3.762 18 O -0.467 6.467 19 H 0.071 0.929 20 H 0.084 0.916 21 H 0.090 0.910 22 H 0.401 0.599 23 H 0.276 0.724 24 H 0.159 0.841 25 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.458 -9.124 -1.606 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.182 5.182 3 N -0.086 5.086 4 C -0.091 4.091 5 C 0.282 3.718 6 O -0.473 6.473 7 N -0.162 5.162 8 C -0.429 4.429 9 H 0.127 0.873 10 C -0.178 4.178 11 N -0.524 5.524 12 Si 0.763 3.237 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.196 1.196 16 C -0.258 4.258 17 C 0.072 3.928 18 O -0.269 6.269 19 H 0.089 0.911 20 H 0.103 0.897 21 H 0.109 0.891 22 H 0.236 0.764 23 H 0.086 0.914 24 H 0.177 0.823 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -8.671 -8.300 -0.993 12.044 hybrid contribution 0.320 -0.086 -0.512 0.610 sum -8.350 -8.386 -1.505 11.930 Atomic orbital electron populations 1.21782 0.74812 1.04480 1.02996 1.49224 1.06663 1.03650 1.58683 1.77912 1.01079 1.05056 1.24544 1.22515 0.92382 0.94219 0.99964 1.16487 0.85798 0.82105 0.87365 1.90623 1.24082 1.74410 1.58182 1.41850 1.10405 1.03865 1.60068 1.19816 0.88435 0.87302 1.47395 0.87311 1.25420 0.98324 0.97480 0.96597 1.69633 1.21733 1.13223 1.47809 0.85820 0.80464 0.78087 0.79320 1.19595 1.20815 1.19597 1.21129 0.95350 0.94546 1.14750 1.18683 0.88814 0.80267 1.05075 1.84873 1.88696 1.19609 1.33745 0.91078 0.89698 0.89098 0.76415 0.91386 0.82328 0.75087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 11.42 59.85 0.68 1.77 15 2 N -0.39 -6.32 4.04 -68.18 -0.28 -6.60 15 3 N -0.26 -5.29 12.26 33.33 0.41 -4.88 15 4 C 0.08 1.71 7.09 -82.92 -0.59 1.12 15 5 C 0.50 13.16 7.77 -12.43 -0.10 13.06 15 6 O -0.59 -16.97 16.47 5.26 0.09 -16.89 15 7 N -0.53 -14.44 5.28 -11.90 -0.06 -14.50 15 8 C -0.30 -8.50 9.68 -14.99 -0.15 -8.64 15 9 H 0.11 3.16 7.15 -52.49 -0.38 2.78 15 10 C 0.03 0.70 5.50 -17.45 -0.10 0.60 15 11 N -0.88 -24.30 13.05 55.50 0.72 -23.58 15 12 Si 0.94 20.82 29.55 -169.99 -5.02 15.79 15 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 14 H -0.28 -6.11 7.11 56.52 0.40 -5.70 15 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 16 C -0.23 -4.34 10.59 -39.45 -0.42 -4.76 15 17 C 0.24 3.81 7.97 -16.72 -0.13 3.67 15 18 O -0.47 -5.52 13.58 -19.03 -0.26 -5.78 15 19 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.09 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.40 10.81 7.59 -40.82 -0.31 10.50 15 23 H 0.28 7.09 8.31 -40.82 -0.34 6.75 15 24 H 0.16 2.88 8.06 -52.48 -0.42 2.45 15 25 H 0.39 2.51 9.06 45.56 0.41 2.92 15 LS Contribution 240.17 15.07 3.62 3.62 Total: -1.00 -33.71 240.17 -2.67 -36.38 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -1.10 Total: 9.63 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -0.79 Total: 6.81 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.79 Total: -49.56 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.17 Total: -22.67 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.71 -2.67 -36.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327831049.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.129 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds