Wall clock time and date at job start Sun Mar 29 2020 22:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40061 * 125.94445 * 2 1 4 4 C 1.31917 * 108.22015 * 179.97438 * 3 2 1 5 5 C 1.47616 * 125.98442 * 179.97438 * 4 3 2 6 6 O 1.21615 * 120.00082 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00072 * 0.02562 * 5 4 3 8 8 C 1.36915 * 119.99864 * 179.97438 * 7 5 4 9 9 H 1.07995 * 120.00067 * 359.72767 * 8 7 5 10 10 C 1.39023 * 119.99723 * 179.97438 * 8 7 5 11 11 N 1.31380 * 119.99840 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99654 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47028 * 60.00944 * 12 10 8 14 14 H 1.48503 * 109.46851 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47412 * 300.00553 * 12 10 8 16 16 C 1.41091 * 108.02917 * 0.25657 * 4 3 2 17 17 C 1.35577 * 107.79750 * 359.56801 * 16 4 3 18 18 O 1.35774 * 126.07903 * 180.15554 * 17 16 4 19 19 H 1.08995 * 109.46878 * 90.03215 * 1 2 3 20 20 H 1.09005 * 109.46717 * 210.02862 * 1 2 3 21 21 H 1.09000 * 109.47232 * 330.02698 * 1 2 3 22 22 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 23 23 H 0.97005 * 119.99761 * 179.97438 * 11 10 8 24 24 H 1.08004 * 126.10401 * 179.74464 * 16 4 3 25 25 H 0.96703 * 113.99877 * 270.32424 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1339 0.0000 4 6 3.5437 0.7323 0.0006 5 6 4.7335 1.6060 0.0002 6 8 5.8470 1.1171 0.0003 7 7 4.5859 2.9457 -0.0002 8 6 5.6894 3.7560 0.0000 9 1 6.6782 3.3218 0.0050 10 6 5.5371 5.1379 -0.0010 11 7 4.3341 5.6661 -0.0016 12 14 7.0428 6.2435 0.0001 13 1 7.8573 5.9716 -1.2115 14 1 6.6131 7.6650 -0.0006 15 1 7.8548 5.9729 1.2135 16 6 3.5512 -0.6786 -0.0051 17 6 2.2626 -1.0999 0.0007 18 8 1.8436 -2.3913 0.0010 19 1 -0.3633 -0.0006 -1.0276 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3634 0.8902 0.5134 22 1 3.6977 3.3357 -0.0007 23 1 4.2278 6.6303 -0.0019 24 1 4.4272 -1.3103 -0.0100 25 1 1.7226 -2.7658 -0.8823 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327831049.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:26 Heat of formation + Delta-G solvation = -26.504987 kcal Electronic energy + Delta-G solvation = -13350.288922 eV Core-core repulsion = 10751.046032 eV Total energy + Delta-G solvation = -2599.242890 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.35848 -39.90581 -38.15360 -36.11288 -34.21974 -33.33184 -30.34553 -28.45321 -26.86785 -23.88995 -22.32917 -20.90372 -20.08240 -19.35551 -17.59059 -17.37019 -16.57813 -16.37184 -15.80925 -15.43040 -15.27269 -15.05196 -14.60848 -13.57390 -13.45832 -13.39813 -12.91429 -12.74386 -12.50216 -12.11040 -11.68722 -11.59302 -10.74039 -10.32998 -10.12588 -9.70659 -8.55278 -6.03041 0.33950 0.99685 1.28321 1.43123 1.50314 1.55923 2.26184 2.43590 2.73413 3.23908 3.34300 3.48395 4.24687 4.41306 4.45402 4.58978 4.68253 4.75930 5.28227 5.35080 5.67655 5.87328 6.28710 6.52786 6.65102 6.98428 7.39839 7.92905 8.61633 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.061651 B = 0.007247 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.064077 B = 3862.659557 C = 4299.026086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.372 5.372 3 N -0.277 5.277 4 C 0.045 3.955 5 C 0.496 3.504 6 O -0.623 6.623 7 N -0.538 5.538 8 C -0.342 4.342 9 H 0.092 0.908 10 C -0.009 4.009 11 N -0.909 5.909 12 Si 1.006 2.994 13 H -0.266 1.266 14 H -0.267 1.267 15 H -0.267 1.267 16 C -0.254 4.254 17 C 0.275 3.725 18 O -0.454 6.454 19 H 0.099 0.901 20 H 0.116 0.884 21 H 0.093 0.907 22 H 0.400 0.600 23 H 0.284 0.716 24 H 0.160 0.840 25 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.996 -9.941 -1.793 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.167 5.167 3 N -0.109 5.109 4 C -0.120 4.120 5 C 0.282 3.718 6 O -0.510 6.510 7 N -0.172 5.172 8 C -0.471 4.471 9 H 0.110 0.890 10 C -0.211 4.211 11 N -0.548 5.548 12 Si 0.828 3.172 13 H -0.191 1.191 14 H -0.191 1.191 15 H -0.192 1.192 16 C -0.284 4.284 17 C 0.105 3.895 18 O -0.261 6.261 19 H 0.117 0.883 20 H 0.135 0.865 21 H 0.112 0.888 22 H 0.234 0.766 23 H 0.093 0.907 24 H 0.177 0.823 25 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -10.250 -9.127 -1.203 13.778 hybrid contribution 0.560 -0.037 -0.463 0.728 sum -9.690 -9.164 -1.667 13.441 Atomic orbital electron populations 1.22331 0.71240 1.06262 1.05399 1.49618 1.08416 1.02630 1.56076 1.77796 1.00858 1.07284 1.24958 1.21935 0.91798 0.94976 1.03252 1.17074 0.86865 0.82155 0.85663 1.90565 1.26032 1.75103 1.59253 1.41885 1.10049 1.04324 1.60916 1.19890 0.88233 0.88511 1.50512 0.89043 1.26336 1.01609 0.98048 0.95081 1.69702 1.23501 1.13998 1.47636 0.84807 0.76588 0.76426 0.79403 1.19082 1.19135 1.19193 1.21200 0.97238 0.93137 1.16854 1.18396 0.87592 0.81678 1.01787 1.84842 1.88057 1.16916 1.36309 0.88310 0.86517 0.88785 0.76559 0.90656 0.82263 0.71457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 11.42 127.77 1.46 2.97 15 2 N -0.37 -11.15 4.04 -480.55 -1.94 -13.09 15 3 N -0.28 -11.37 12.26 -48.46 -0.59 -11.96 15 4 C 0.05 2.06 7.09 42.31 0.30 2.36 15 5 C 0.50 27.41 7.77 86.72 0.67 28.08 15 6 O -0.62 -37.65 16.47 -4.08 -0.07 -37.72 15 7 N -0.54 -30.76 5.28 -309.81 -1.63 -32.39 15 8 C -0.34 -20.21 9.68 84.09 0.81 -19.40 15 9 H 0.09 5.59 7.15 -2.91 -0.02 5.57 15 10 C -0.01 -0.49 5.50 84.95 0.47 -0.02 15 11 N -0.91 -50.46 13.05 21.68 0.28 -50.18 15 12 Si 1.01 42.81 29.55 68.60 2.03 44.84 15 13 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 14 H -0.27 -10.59 7.11 99.48 0.71 -9.89 15 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 16 C -0.25 -9.57 10.59 22.35 0.24 -9.34 15 17 C 0.28 8.00 7.97 83.45 0.67 8.66 15 18 O -0.45 -8.68 13.58 -91.02 -1.24 -9.92 15 19 H 0.10 1.27 8.14 -2.39 -0.02 1.25 15 20 H 0.12 1.37 8.14 -2.38 -0.02 1.35 15 21 H 0.09 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.40 22.49 7.59 -92.71 -0.70 21.79 15 23 H 0.28 14.50 8.31 -92.70 -0.77 13.73 15 24 H 0.16 5.81 8.06 -2.91 -0.02 5.78 15 25 H 0.42 3.16 9.06 -74.06 -0.67 2.49 15 Total: -1.00 -75.51 240.17 1.33 -74.19 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.13 Total: 22.92 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 4.62 Total: 13.31 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -3.89 Total: -107.62 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.30 Total: -47.63 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -75.51 1.33 -74.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327831049.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.681 kcal (2) G-P(sol) polarization free energy of solvation -75.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds