Wall clock time and date at job start Sun Mar 29 2020 21:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.50706 * 109.47293 * 293.95211 * 3 2 1 5 5 H 1.08003 * 119.99552 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99706 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00377 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99837 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47394 * 89.99427 * 8 6 4 10 10 H 1.48497 * 109.47272 * 209.99889 * 8 6 4 11 11 H 1.48503 * 109.46713 * 329.99903 * 8 6 4 12 12 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 13 13 C 1.52997 * 109.47254 * 66.04707 * 12 2 1 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 2 15 15 C 1.35348 * 126.91385 * 274.68843 * 14 13 12 16 16 N 1.33775 * 106.49941 * 179.90531 * 15 14 13 17 17 N 1.28635 * 108.88364 * 0.36095 * 16 15 14 18 18 N 1.28722 * 110.17899 * 359.77279 * 17 16 15 19 19 H 0.97000 * 125.86571 * 180.02562 * 18 17 16 20 20 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 21 21 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 22 22 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 23 23 H 1.09006 * 109.47466 * 53.95276 * 3 2 1 24 24 H 1.09000 * 109.46995 * 173.95474 * 3 2 1 25 25 H 0.97004 * 120.00259 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47043 * 186.04778 * 12 2 1 27 27 H 1.09001 * 109.47354 * 306.04839 * 12 2 1 28 28 H 1.09002 * 109.47153 * 300.00004 * 13 12 2 29 29 H 1.08998 * 109.47533 * 59.99633 * 13 12 2 30 30 H 1.08003 * 126.75270 * 0.03050 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5288 7 7 2.7128 4.0015 -0.6153 8 14 1.5827 4.1870 -3.1381 9 1 0.2708 4.8679 -2.9954 10 1 2.6253 5.1876 -3.4800 11 1 1.4983 3.1712 -4.2181 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9704 14 6 2.1720 -3.0285 2.1371 15 6 3.4171 -3.5441 2.2630 16 7 3.4563 -4.1566 3.4516 17 7 2.3090 -4.0353 4.0205 18 7 1.5084 -3.3657 3.2671 19 1 0.5877 -3.1410 3.4741 20 1 -0.3634 0.4512 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0253 -0.0709 23 1 1.5611 1.9274 0.8309 24 1 3.0797 1.3444 0.1082 25 1 2.9880 4.9174 -0.7776 26 1 3.0797 -0.6611 1.1757 27 1 1.5611 -0.3872 2.0628 28 1 0.5472 -2.3475 0.9323 29 1 2.0658 -2.6214 0.0452 30 1 4.2215 -3.4730 1.5458 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327870277.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:51 Heat of formation + Delta-G solvation = 90.111613 kcal Electronic energy + Delta-G solvation = -13362.539029 eV Core-core repulsion = 11001.904771 eV Total energy + Delta-G solvation = -2360.634258 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.28574 -37.09853 -33.75247 -33.05252 -32.20895 -28.91452 -27.08899 -25.52135 -23.13040 -22.78186 -21.45774 -20.19746 -18.19192 -16.44807 -16.02880 -15.19330 -15.01002 -14.47652 -14.14002 -13.63251 -13.24786 -12.90980 -12.05139 -11.87833 -11.74908 -11.25829 -11.12910 -10.96799 -10.71572 -10.64717 -10.60269 -10.43953 -9.93600 -9.36505 -9.04027 -8.49750 -7.39704 -6.08156 -4.10180 1.54530 2.55372 2.71996 3.28162 3.34911 3.38762 4.32911 4.45616 4.68189 4.96443 5.12605 5.27244 5.32323 5.41279 5.57918 5.72768 5.96179 6.09716 6.14243 6.25690 6.28073 6.62658 6.79983 7.19079 7.24127 7.71658 7.98475 8.08471 8.42656 8.44621 8.97166 9.54477 11.02757 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.073677 B = 0.005527 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.944319 B = 5064.993226 C = 5206.866979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.539 5.539 3 C 0.192 3.808 4 C -0.510 4.510 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.060 3.940 13 C -0.048 4.048 14 C 0.006 3.994 15 C -0.050 4.050 16 N -0.268 5.268 17 N -0.093 5.093 18 N -0.393 5.393 19 H 0.446 0.554 20 H 0.010 0.990 21 H 0.076 0.924 22 H 0.046 0.954 23 H -0.009 1.009 24 H 0.031 0.969 25 H 0.262 0.738 26 H 0.075 0.925 27 H 0.021 0.979 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -11.206 3.563 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.264 5.264 3 C 0.067 3.933 4 C -0.548 4.548 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.069 4.069 13 C -0.088 4.088 14 C -0.128 4.128 15 C -0.207 4.207 16 N -0.136 5.136 17 N -0.073 5.073 18 N -0.113 5.113 19 H 0.291 0.709 20 H 0.029 0.971 21 H 0.095 0.905 22 H 0.064 0.936 23 H 0.009 0.991 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.039 0.961 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.343 -12.040 4.499 13.280 hybrid contribution -1.185 1.759 -0.901 2.305 sum -4.528 -10.280 3.598 11.795 Atomic orbital electron populations 1.22292 0.89032 0.99480 1.00764 1.62116 1.06890 1.18121 1.39245 1.19754 0.95511 0.81233 0.96755 1.21143 1.35019 0.96969 1.01681 0.91773 1.24994 0.95213 0.97353 0.97038 1.69956 1.38198 1.11503 1.34131 0.86489 0.78001 0.79251 0.83634 1.20755 1.21210 1.19706 1.22025 1.00876 0.91150 0.92884 1.20290 1.01063 0.94354 0.93055 1.22500 0.94337 1.04037 0.91973 1.23454 0.97424 1.02426 0.97396 1.75057 1.12799 1.18680 1.07028 1.78238 0.96759 1.13758 1.18541 1.45120 1.15144 1.37746 1.13326 0.70910 0.97124 0.90481 0.93564 0.99134 0.95053 0.92846 0.90630 0.96110 0.90565 0.87819 0.79117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.14 60.07 0.55 1.13 16 2 N -0.54 -10.71 4.75 -244.36 -1.16 -11.87 16 3 C 0.19 4.83 4.72 -4.98 -0.02 4.80 16 4 C -0.51 -13.87 8.46 -34.44 -0.29 -14.16 16 5 H 0.06 1.72 7.12 -52.48 -0.37 1.34 16 6 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 12 C 0.06 0.96 4.94 -3.83 -0.02 0.94 16 13 C -0.05 -0.56 5.71 -27.89 -0.16 -0.72 16 14 C 0.01 0.07 6.56 -82.09 -0.54 -0.47 16 15 C -0.05 -0.64 11.99 -17.74 -0.21 -0.86 16 16 N -0.27 -4.04 12.41 30.24 0.38 -3.67 16 17 N -0.09 -1.31 13.38 60.35 0.81 -0.50 16 18 N -0.39 -4.38 6.98 33.54 0.23 -4.14 16 19 H 0.45 3.35 8.96 -190.40 -1.71 1.64 16 20 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 21 H 0.08 1.48 6.76 -51.93 -0.35 1.13 16 22 H 0.05 0.65 6.47 -51.93 -0.34 0.31 16 23 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 24 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 27 H 0.02 0.34 8.12 -51.93 -0.42 -0.09 16 28 H 0.08 0.80 6.55 -51.93 -0.34 0.46 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.19 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 259.26 15.07 3.91 3.91 Total: -1.00 -31.41 259.26 -6.09 -37.50 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -5.18 Total: -3.89 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.79 Total: -7.89 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.99 Total: -45.71 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.41 -6.09 -37.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327870277.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.612 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds