Wall clock time and date at job start Sun Mar 29 2020 21:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.50706 * 109.47293 * 293.95211 * 3 2 1 5 5 H 1.08003 * 119.99552 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99706 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00377 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99837 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47394 * 89.99427 * 8 6 4 10 10 H 1.48497 * 109.47272 * 209.99889 * 8 6 4 11 11 H 1.48503 * 109.46713 * 329.99903 * 8 6 4 12 12 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 13 13 C 1.52997 * 109.47254 * 66.04707 * 12 2 1 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 2 15 15 C 1.35348 * 126.91385 * 274.68843 * 14 13 12 16 16 N 1.33775 * 106.49941 * 179.90531 * 15 14 13 17 17 N 1.28635 * 108.88364 * 0.36095 * 16 15 14 18 18 N 1.28722 * 110.17899 * 359.77279 * 17 16 15 19 19 H 0.97000 * 125.86571 * 180.02562 * 18 17 16 20 20 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 21 21 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 22 22 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 23 23 H 1.09006 * 109.47466 * 53.95276 * 3 2 1 24 24 H 1.09000 * 109.46995 * 173.95474 * 3 2 1 25 25 H 0.97004 * 120.00259 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47043 * 186.04778 * 12 2 1 27 27 H 1.09001 * 109.47354 * 306.04839 * 12 2 1 28 28 H 1.09002 * 109.47153 * 300.00004 * 13 12 2 29 29 H 1.08998 * 109.47533 * 59.99633 * 13 12 2 30 30 H 1.08003 * 126.75270 * 0.03050 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5288 7 7 2.7128 4.0015 -0.6153 8 14 1.5827 4.1870 -3.1381 9 1 0.2708 4.8679 -2.9954 10 1 2.6253 5.1876 -3.4800 11 1 1.4983 3.1712 -4.2181 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9704 14 6 2.1720 -3.0285 2.1371 15 6 3.4171 -3.5441 2.2630 16 7 3.4563 -4.1566 3.4516 17 7 2.3090 -4.0353 4.0205 18 7 1.5084 -3.3657 3.2671 19 1 0.5877 -3.1410 3.4741 20 1 -0.3634 0.4512 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0253 -0.0709 23 1 1.5611 1.9274 0.8309 24 1 3.0797 1.3444 0.1082 25 1 2.9880 4.9174 -0.7776 26 1 3.0797 -0.6611 1.1757 27 1 1.5611 -0.3872 2.0628 28 1 0.5472 -2.3475 0.9323 29 1 2.0658 -2.6214 0.0452 30 1 4.2215 -3.4730 1.5458 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327870277.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:50 Heat of formation + Delta-G solvation = 66.337853 kcal Electronic energy + Delta-G solvation = -13363.569936 eV Core-core repulsion = 11001.904771 eV Total energy + Delta-G solvation = -2361.665165 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.27880 -38.60660 -35.18208 -34.39420 -33.67825 -30.27285 -28.78666 -27.04841 -24.56250 -23.92761 -22.67389 -21.67711 -19.18312 -18.48465 -17.09941 -16.81430 -16.36537 -16.03337 -15.27581 -15.14083 -14.59706 -14.25610 -13.93492 -13.21231 -13.08634 -12.74136 -12.71629 -12.50209 -12.32160 -12.22957 -11.89249 -11.64374 -11.51297 -11.29324 -10.60865 -10.13137 -9.03870 -8.19411 -6.29533 0.56149 1.43601 1.44918 1.53142 1.56523 1.87188 2.42017 3.13731 3.23515 3.64228 3.87317 4.03681 4.18216 4.34168 4.47100 4.55943 4.64298 4.79004 5.02651 5.07929 5.14375 5.18641 5.25634 5.35786 5.66374 5.99011 6.05736 6.31288 6.62400 6.87416 7.40729 7.41848 8.91798 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.073677 B = 0.005527 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.944319 B = 5064.993226 C = 5206.866979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.544 5.544 3 C 0.205 3.795 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.000 4.000 7 N -0.937 5.937 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.262 1.262 12 C 0.061 3.939 13 C -0.029 4.029 14 C 0.011 3.989 15 C -0.057 4.057 16 N -0.301 5.301 17 N -0.111 5.111 18 N -0.375 5.375 19 H 0.461 0.539 20 H 0.009 0.991 21 H 0.056 0.944 22 H 0.092 0.908 23 H -0.040 1.040 24 H 0.004 0.996 25 H 0.264 0.736 26 H 0.063 0.937 27 H 0.018 0.982 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 -12.107 2.498 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.268 5.268 3 C 0.078 3.922 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.198 4.198 7 N -0.578 5.578 8 Si 0.794 3.206 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.186 1.186 12 C -0.068 4.068 13 C -0.069 4.069 14 C -0.124 4.124 15 C -0.214 4.214 16 N -0.167 5.167 17 N -0.091 5.091 18 N -0.099 5.099 19 H 0.310 0.690 20 H 0.028 0.972 21 H 0.075 0.925 22 H 0.110 0.890 23 H -0.022 1.022 24 H 0.022 0.978 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.580 -12.973 3.455 14.185 hybrid contribution -0.822 2.012 -0.521 2.235 sum -5.402 -10.961 2.934 12.568 Atomic orbital electron populations 1.22345 0.87316 1.02007 0.99806 1.62010 1.08447 1.15038 1.41309 1.19407 0.93772 0.83999 0.94983 1.21500 1.34711 0.97426 1.02400 0.91416 1.25925 0.95023 0.98186 1.00641 1.70090 1.39481 1.11907 1.36327 0.85382 0.77812 0.78142 0.79291 1.19908 1.21064 1.18599 1.22057 1.00057 0.93336 0.91395 1.20101 1.02560 0.90919 0.93313 1.22430 0.94071 1.03867 0.92036 1.23908 0.98463 1.01923 0.97151 1.75042 1.13515 1.20020 1.08159 1.78185 0.97059 1.14733 1.19136 1.45137 1.15680 1.36451 1.12582 0.69001 0.97237 0.92504 0.89006 1.02229 0.97807 0.92760 0.91881 0.96330 0.88186 0.86805 0.77302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 9.14 127.69 1.17 2.27 16 2 N -0.54 -21.07 4.75 -927.02 -4.41 -25.48 16 3 C 0.20 10.49 4.72 85.56 0.40 10.90 16 4 C -0.52 -28.54 8.46 25.60 0.22 -28.32 16 5 H 0.07 3.58 7.12 -2.91 -0.02 3.56 16 6 C 0.00 0.00 5.46 84.65 0.46 0.46 16 7 N -0.94 -55.75 13.29 21.44 0.28 -55.46 16 8 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 12 C 0.06 1.85 4.94 86.30 0.43 2.27 16 13 C -0.03 -0.60 5.71 29.85 0.17 -0.43 16 14 C 0.01 0.24 6.56 41.35 0.27 0.51 16 15 C -0.06 -1.37 11.99 83.73 1.00 -0.37 16 16 N -0.30 -8.76 12.41 -58.25 -0.72 -9.49 16 17 N -0.11 -2.99 13.38 37.02 0.50 -2.49 16 18 N -0.38 -7.52 6.98 -47.79 -0.33 -7.86 16 19 H 0.46 5.69 8.96 -219.95 -1.97 3.72 16 20 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 21 H 0.06 2.11 6.76 -2.38 -0.02 2.09 16 22 H 0.09 2.19 6.47 -2.39 -0.02 2.18 16 23 H -0.04 -2.25 8.12 -2.38 -0.02 -2.27 16 24 H 0.00 0.21 7.93 -2.39 -0.02 0.19 16 25 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 26 H 0.06 2.07 7.93 -2.39 -0.02 2.05 16 27 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16 28 H 0.10 1.62 6.55 -2.39 -0.02 1.60 16 29 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.21 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -68.15 259.26 0.64 -67.51 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -0.83 Total: 0.86 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 4.12 Total: -12.70 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -4.68 Total: -100.77 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -68.15 0.64 -67.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327870277.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.850 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds