Wall clock time and date at job start Sun Mar 29 2020 21:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46715 * 2 1 4 4 H 1.09009 * 109.46798 * 175.64935 * 3 2 1 5 5 C 1.50700 * 109.47354 * 55.65328 * 3 2 1 6 6 H 1.07995 * 120.00114 * 239.99724 * 5 3 2 7 7 C 1.37877 * 119.99749 * 59.72340 * 5 3 2 8 8 N 1.31517 * 120.00237 * 0.27155 * 7 5 3 9 9 Si 1.86804 * 119.99689 * 180.27883 * 7 5 3 10 10 H 1.48501 * 109.47106 * 89.99908 * 9 7 5 11 11 H 1.48505 * 109.46959 * 209.99482 * 9 7 5 12 12 H 1.48502 * 109.47042 * 329.99558 * 9 7 5 13 13 N 1.46894 * 109.47176 * 295.64834 * 3 2 1 14 14 C 1.46898 * 111.00215 * 273.94883 * 13 3 2 15 15 C 1.50702 * 109.47025 * 176.18939 * 14 13 3 16 16 N 1.33238 * 125.52805 * 269.69150 * 15 14 13 17 17 C 1.30831 * 109.83049 * 179.85506 * 16 15 14 18 18 N 1.34436 * 108.07665 * 0.40768 * 17 16 15 19 19 H 0.96997 * 126.82018 * 179.78482 * 18 17 16 20 20 N 1.30711 * 125.52325 * 90.00611 * 15 14 13 21 21 H 1.08997 * 109.47076 * 185.26851 * 1 2 3 22 22 H 1.09005 * 109.46835 * 305.26153 * 1 2 3 23 23 H 1.08997 * 109.47106 * 65.26092 * 1 2 3 24 24 H 1.09002 * 109.47294 * 240.00387 * 2 1 3 25 25 H 1.09000 * 109.47470 * 119.99788 * 2 1 3 26 26 H 0.97001 * 119.99761 * 180.02562 * 8 7 5 27 27 H 1.00901 * 111.00093 * 37.91319 * 13 3 2 28 28 H 1.08993 * 109.47362 * 296.19456 * 14 13 3 29 29 H 1.09004 * 109.47219 * 56.19341 * 14 13 3 30 30 H 1.08001 * 125.96557 * 180.12889 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1273 1.4436 0.0780 5 6 1.4516 2.1834 1.1731 6 1 0.8402 3.0581 1.0077 7 6 1.6893 1.7411 2.4572 8 7 2.4339 0.6759 2.6586 9 14 0.9536 2.6549 3.9109 10 1 -0.3815 2.0872 4.2281 11 1 1.8456 2.5103 5.0893 12 1 0.8117 4.0935 3.5709 13 7 1.6380 2.1040 -1.2485 14 6 2.6142 1.8507 -2.3165 15 6 2.1228 2.4644 -3.6022 16 7 1.3653 1.8532 -4.5120 17 6 1.1169 2.6696 -5.5037 18 7 1.7300 3.8379 -5.2457 19 1 1.7268 4.6316 -5.8033 20 7 2.3754 3.6809 -4.0082 21 1 -0.3633 -1.0233 0.0944 22 1 -0.3633 0.5933 0.8392 23 1 -0.3633 0.4301 -0.9333 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.6007 0.3645 3.5620 27 1 0.7124 1.8159 -1.5286 28 1 3.5725 2.2935 -2.0454 29 1 2.7356 0.7757 -2.4503 30 1 0.5264 2.4431 -6.3791 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328414206.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:06 Heat of formation + Delta-G solvation = 83.310297 kcal Electronic energy + Delta-G solvation = -13700.070519 eV Core-core repulsion = 11339.141334 eV Total energy + Delta-G solvation = -2360.929185 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.88501 -36.54345 -33.30734 -31.97384 -31.22082 -30.03357 -26.83754 -24.67293 -23.13174 -22.58373 -20.07327 -19.24430 -18.20460 -16.13775 -15.40744 -15.18670 -14.67618 -14.28473 -13.65176 -12.87621 -12.71107 -12.31923 -11.96001 -11.85806 -11.52685 -10.88223 -10.68183 -10.46034 -10.04794 -9.97507 -9.84944 -9.78560 -9.51430 -9.43449 -8.93561 -8.29077 -7.19146 -5.92357 -3.93520 1.77061 2.80111 3.08522 3.36689 3.43244 3.48431 4.29817 4.50370 4.90726 5.10526 5.39287 5.60370 6.10196 6.14114 6.41381 6.44301 6.46043 6.62074 6.64241 6.99747 7.12419 7.30610 7.33541 7.57988 7.76435 7.93728 8.26500 8.32713 8.57437 8.64724 9.11833 9.69663 11.14723 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.049333 B = 0.007306 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.436075 B = 3831.739467 C = 4059.702375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.147 4.147 3 C 0.216 3.784 4 H 0.036 0.964 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.148 3.852 15 C 0.243 3.757 16 N -0.542 5.542 17 C 0.251 3.749 18 N -0.493 5.493 19 H 0.437 0.563 20 N -0.300 5.300 21 H 0.024 0.976 22 H 0.067 0.933 23 H 0.028 0.972 24 H 0.013 0.987 25 H 0.094 0.906 26 H 0.259 0.741 27 H 0.331 0.669 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 2.351 -13.836 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.309 5.309 14 C 0.016 3.984 15 C -0.040 4.040 16 N -0.270 5.270 17 C -0.049 4.049 18 N -0.211 5.211 19 H 0.282 0.718 20 N -0.130 5.130 21 H 0.043 0.957 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.032 0.968 25 H 0.113 0.887 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.551 2.977 -13.031 13.457 hybrid contribution -0.803 -0.020 -0.105 0.810 sum -2.354 2.957 -13.136 13.669 Atomic orbital electron populations 1.21597 0.97712 0.98744 1.00739 1.22112 0.95053 1.00954 1.00484 1.19247 0.96096 0.88648 0.85138 0.94648 1.21052 1.30574 1.11402 0.89541 0.92013 1.24900 0.95556 0.95187 0.98698 1.69882 1.38816 1.23828 1.21081 0.86565 0.78827 0.80296 0.82123 1.20879 1.21428 1.19945 1.60911 1.03834 1.63252 1.02890 1.20223 0.97226 0.97024 0.83919 1.24566 0.94261 0.88265 0.96868 1.70446 1.19955 1.33486 1.03142 1.26028 0.96562 0.82886 0.99384 1.48200 1.40396 1.14573 1.17933 0.71790 1.78113 1.20257 1.19474 0.95110 0.95693 0.91364 0.95298 0.96780 0.88733 0.93131 0.85051 0.89444 0.93219 0.76551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.40 37.16 0.35 -2.52 16 2 C -0.15 -3.49 5.52 -26.73 -0.15 -3.64 16 3 C 0.22 5.43 2.33 -68.87 -0.16 5.27 16 4 H 0.04 0.97 7.83 -51.92 -0.41 0.56 16 5 C -0.49 -13.40 7.29 -34.44 -0.25 -13.65 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 8 N -0.90 -25.44 11.36 55.43 0.63 -24.81 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -15.12 6.25 -109.22 -0.68 -15.80 16 14 C 0.15 2.90 6.10 -4.98 -0.03 2.87 16 15 C 0.24 4.41 7.61 -156.86 -1.19 3.21 16 16 N -0.54 -8.78 11.19 -11.97 -0.13 -8.91 16 17 C 0.25 2.81 13.13 -90.65 -1.19 1.62 16 18 N -0.49 -5.70 7.45 29.53 0.22 -5.48 16 19 H 0.44 3.13 8.96 -182.33 -1.63 1.49 16 20 N -0.30 -5.13 12.80 32.42 0.41 -4.72 16 21 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.07 1.63 6.89 -51.93 -0.36 1.27 16 23 H 0.03 0.58 6.61 -51.93 -0.34 0.24 16 24 H 0.01 0.30 7.39 -51.93 -0.38 -0.08 16 25 H 0.09 2.50 6.19 -51.93 -0.32 2.18 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.33 7.31 6.54 -39.29 -0.26 7.05 16 28 H 0.09 1.70 8.13 -51.93 -0.42 1.28 16 29 H 0.05 0.96 7.38 -51.93 -0.38 0.58 16 30 H 0.22 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 254.81 15.07 3.84 3.84 Total: -1.00 -31.99 254.81 -8.35 -40.35 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.90 Total: 4.30 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.72 Total: -5.35 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.45 Total: -59.72 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.99 -8.35 -40.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328414206.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.656 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds