Wall clock time and date at job start Sun Mar 29 2020 21:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46715 * 2 1 4 4 H 1.09009 * 109.46798 * 175.64935 * 3 2 1 5 5 C 1.50700 * 109.47354 * 55.65328 * 3 2 1 6 6 H 1.07995 * 120.00114 * 239.99724 * 5 3 2 7 7 C 1.37877 * 119.99749 * 59.72340 * 5 3 2 8 8 N 1.31517 * 120.00237 * 0.27155 * 7 5 3 9 9 Si 1.86804 * 119.99689 * 180.27883 * 7 5 3 10 10 H 1.48501 * 109.47106 * 89.99908 * 9 7 5 11 11 H 1.48505 * 109.46959 * 209.99482 * 9 7 5 12 12 H 1.48502 * 109.47042 * 329.99558 * 9 7 5 13 13 N 1.46894 * 109.47176 * 295.64834 * 3 2 1 14 14 C 1.46898 * 111.00215 * 273.94883 * 13 3 2 15 15 C 1.50702 * 109.47025 * 176.18939 * 14 13 3 16 16 N 1.33238 * 125.52805 * 269.69150 * 15 14 13 17 17 C 1.30831 * 109.83049 * 179.85506 * 16 15 14 18 18 N 1.34436 * 108.07665 * 0.40768 * 17 16 15 19 19 H 0.96997 * 126.82018 * 179.78482 * 18 17 16 20 20 N 1.30711 * 125.52325 * 90.00611 * 15 14 13 21 21 H 1.08997 * 109.47076 * 185.26851 * 1 2 3 22 22 H 1.09005 * 109.46835 * 305.26153 * 1 2 3 23 23 H 1.08997 * 109.47106 * 65.26092 * 1 2 3 24 24 H 1.09002 * 109.47294 * 240.00387 * 2 1 3 25 25 H 1.09000 * 109.47470 * 119.99788 * 2 1 3 26 26 H 0.97001 * 119.99761 * 180.02562 * 8 7 5 27 27 H 1.00901 * 111.00093 * 37.91319 * 13 3 2 28 28 H 1.08993 * 109.47362 * 296.19456 * 14 13 3 29 29 H 1.09004 * 109.47219 * 56.19341 * 14 13 3 30 30 H 1.08001 * 125.96557 * 180.12889 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1273 1.4436 0.0780 5 6 1.4516 2.1834 1.1731 6 1 0.8402 3.0581 1.0077 7 6 1.6893 1.7411 2.4572 8 7 2.4339 0.6759 2.6586 9 14 0.9536 2.6549 3.9109 10 1 -0.3815 2.0872 4.2281 11 1 1.8456 2.5103 5.0893 12 1 0.8117 4.0935 3.5709 13 7 1.6380 2.1040 -1.2485 14 6 2.6142 1.8507 -2.3165 15 6 2.1228 2.4644 -3.6022 16 7 1.3653 1.8532 -4.5120 17 6 1.1169 2.6696 -5.5037 18 7 1.7300 3.8379 -5.2457 19 1 1.7268 4.6316 -5.8033 20 7 2.3754 3.6809 -4.0082 21 1 -0.3633 -1.0233 0.0944 22 1 -0.3633 0.5933 0.8392 23 1 -0.3633 0.4301 -0.9333 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.6007 0.3645 3.5620 27 1 0.7124 1.8159 -1.5286 28 1 3.5725 2.2935 -2.0454 29 1 2.7356 0.7757 -2.4503 30 1 0.5264 2.4431 -6.3791 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328414206.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:06 Heat of formation + Delta-G solvation = 60.504855 kcal Electronic energy + Delta-G solvation = -13701.059437 eV Core-core repulsion = 11339.141334 eV Total energy + Delta-G solvation = -2361.918103 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.99345 -38.38665 -34.96072 -33.49887 -32.66114 -31.57663 -28.69941 -26.44813 -25.02776 -23.60600 -21.43272 -21.12407 -19.22078 -18.13046 -16.85611 -16.77000 -16.26076 -15.66009 -15.40437 -14.65732 -14.43780 -14.10102 -13.69398 -13.25115 -13.02124 -12.79647 -12.58936 -12.43355 -11.90982 -11.71463 -11.41752 -11.08173 -11.02787 -10.97765 -10.66950 -10.40729 -8.99197 -8.03475 -6.11764 0.71300 1.44784 1.45966 1.56324 1.87333 1.92916 2.48418 3.23030 3.25284 3.73464 3.87214 4.26216 4.56883 4.57891 4.60584 4.69479 4.78707 5.14989 5.31203 5.32369 5.37614 5.44188 5.71955 5.76209 5.84232 6.31679 6.35107 6.64817 6.75687 6.98130 7.17580 7.55286 9.02125 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.049333 B = 0.007306 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.436075 B = 3831.739467 C = 4059.702375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.502 4.502 6 H 0.050 0.950 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.153 3.847 15 C 0.226 3.774 16 N -0.579 5.579 17 C 0.275 3.725 18 N -0.476 5.476 19 H 0.458 0.542 20 N -0.335 5.335 21 H 0.044 0.956 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.027 0.973 25 H 0.067 0.933 26 H 0.260 0.740 27 H 0.333 0.667 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 2.779 -15.417 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.023 0.977 5 C -0.540 4.540 6 H 0.068 0.932 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.312 5.312 14 C 0.021 3.979 15 C -0.057 4.057 16 N -0.309 5.309 17 C -0.023 4.023 18 N -0.196 5.196 19 H 0.307 0.693 20 N -0.166 5.166 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -2.842 3.435 -14.651 15.315 hybrid contribution -0.398 -0.111 0.235 0.476 sum -3.241 3.324 -14.416 15.145 Atomic orbital electron populations 1.21474 0.96066 0.99716 1.00569 1.21956 0.96441 0.99752 0.99715 1.19008 0.94039 0.89547 0.86028 0.97739 1.21238 1.30666 1.11316 0.90826 0.93215 1.25571 0.95858 0.95878 1.00978 1.70002 1.39552 1.24802 1.21568 0.85643 0.78333 0.79039 0.79114 1.20061 1.21042 1.19925 1.60756 1.04472 1.63021 1.02910 1.20028 0.96240 0.97209 0.84375 1.24089 0.95781 0.88924 0.96896 1.70384 1.21003 1.35215 1.04293 1.27102 0.94618 0.81307 0.99232 1.48071 1.39272 1.15816 1.16423 0.69310 1.77972 1.21659 1.19284 0.97665 0.93692 0.93581 0.93724 0.95406 0.91493 0.93083 0.84832 0.90362 0.93216 0.70608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 9.40 71.98 0.68 -4.55 16 2 C -0.14 -6.67 5.52 30.60 0.17 -6.51 16 3 C 0.22 11.43 2.33 44.17 0.10 11.53 16 4 H 0.00 0.27 7.83 -2.38 -0.02 0.25 16 5 C -0.50 -28.08 7.29 25.60 0.19 -27.90 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 7 C 0.02 0.86 5.30 84.65 0.45 1.31 16 8 N -0.92 -52.92 11.36 21.45 0.24 -52.68 16 9 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.68 -30.74 6.25 -499.46 -3.12 -33.86 16 14 C 0.15 6.10 6.10 85.56 0.52 6.63 16 15 C 0.23 8.05 7.61 138.63 1.06 9.10 16 16 N -0.58 -17.59 11.19 -191.80 -2.15 -19.73 16 17 C 0.28 5.12 13.13 180.36 2.37 7.49 16 18 N -0.48 -9.63 7.45 -60.49 -0.45 -10.08 16 19 H 0.46 5.01 8.96 -213.10 -1.91 3.10 16 20 N -0.34 -11.09 12.80 -51.34 -0.66 -11.75 16 21 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.05 2.18 6.89 -2.38 -0.02 2.16 16 23 H 0.04 1.76 6.61 -2.39 -0.02 1.74 16 24 H 0.03 1.22 7.39 -2.39 -0.02 1.21 16 25 H 0.07 3.60 6.19 -2.39 -0.01 3.59 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.33 14.66 6.54 -89.69 -0.59 14.07 16 28 H 0.08 3.18 8.13 -2.39 -0.02 3.16 16 29 H 0.05 1.95 7.38 -2.39 -0.02 1.93 16 30 H 0.28 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -70.08 254.81 0.09 -69.99 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -1.33 Total: 14.46 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.53 Total: -2.88 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -6.13 Total: -128.09 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.08 0.09 -69.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328414206.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.497 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds