Wall clock time and date at job start Sun Mar 29 2020 21:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47256 * 2 1 4 4 N 1.30276 * 126.28250 * 90.02168 * 3 2 1 5 5 N 1.28674 * 109.37873 * 179.97438 * 4 3 2 6 6 C 1.30272 * 109.38187 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.28028 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47333 * 90.02341 * 7 6 5 9 9 C 1.53000 * 109.47390 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.46990 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00498 * 0.02562 * 10 9 8 12 12 C 1.37887 * 119.99678 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99613 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 119.99964 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47599 * 89.99866 * 14 12 10 16 16 H 1.48502 * 109.47027 * 210.00106 * 14 12 10 17 17 H 1.48506 * 109.47146 * 329.99291 * 14 12 10 18 18 O 1.34364 * 107.43764 * 359.97438 * 6 5 4 19 19 H 1.09007 * 109.47032 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47165 * 299.99700 * 1 2 3 21 21 H 1.08991 * 109.47436 * 60.00190 * 1 2 3 22 22 H 1.09002 * 109.47602 * 240.00143 * 2 1 3 23 23 H 1.09002 * 109.47598 * 120.00334 * 2 1 3 24 24 H 1.08995 * 109.47102 * 210.02300 * 7 6 5 25 25 H 1.09003 * 109.47108 * 330.02056 * 7 6 5 26 26 H 1.09004 * 109.46778 * 299.99900 * 8 7 6 27 27 H 1.08998 * 109.46817 * 59.99962 * 8 7 6 28 28 H 1.09000 * 109.47046 * 300.00501 * 9 8 7 29 29 H 1.09003 * 109.47016 * 59.99737 * 9 8 7 30 30 H 0.96998 * 119.99795 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2897 2.1475 1.0502 5 7 2.7005 3.3081 0.6760 6 6 2.7186 3.3614 -0.6255 7 6 3.1367 4.5418 -1.4639 8 6 4.6376 4.4589 -1.7489 9 6 5.0620 5.6569 -2.6006 10 6 6.5404 5.5755 -2.8808 11 1 7.1194 4.7515 -2.4908 12 6 7.1538 6.5526 -3.6360 13 7 8.4441 6.4818 -3.8801 14 14 6.1522 7.9775 -4.3111 15 1 6.1481 9.0898 -3.3273 16 1 6.7543 8.4459 -5.5853 17 1 4.7580 7.5296 -4.5578 18 8 2.2972 2.1705 -1.0832 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 2.5871 4.5319 -2.4050 25 1 2.9194 5.4647 -0.9260 26 1 5.1873 4.4689 -0.8077 27 1 4.8548 3.5361 -2.2868 28 1 4.5123 5.6466 -3.5418 29 1 4.8447 6.5800 -2.0632 30 1 8.8756 7.1689 -4.4117 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329282785.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:41 Heat of formation + Delta-G solvation = 10.652310 kcal Electronic energy + Delta-G solvation = -13161.818404 eV Core-core repulsion = 10765.445782 eV Total energy + Delta-G solvation = -2396.372623 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.09192 -36.01912 -35.49226 -34.31960 -32.46508 -30.31415 -27.85299 -24.88043 -24.04576 -22.06675 -21.76077 -20.30338 -17.25165 -17.02699 -16.65837 -15.47699 -14.99467 -14.45141 -14.24089 -13.84808 -13.18579 -12.76947 -12.34153 -12.27979 -12.18919 -11.92222 -11.70803 -11.61950 -11.22341 -10.93439 -10.75016 -10.11242 -9.96259 -9.81120 -9.30418 -9.17518 -8.57240 -6.07241 -4.06313 1.26852 2.35437 2.50496 3.29064 3.36497 3.38372 3.86073 4.42000 4.42469 4.70050 4.75793 5.00062 5.16220 5.26452 5.39833 5.44541 5.50704 5.57112 5.64325 5.67640 5.81928 5.97346 6.34318 6.42577 6.73197 7.18084 7.31276 7.73377 8.43658 8.49478 8.97172 9.54095 11.06202 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.070110 B = 0.005321 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.277018 B = 5260.773011 C = 5328.622532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 C 0.146 3.854 4 N -0.289 5.289 5 N -0.296 5.296 6 C 0.185 3.815 7 C -0.031 4.031 8 C -0.099 4.099 9 C -0.012 4.012 10 C -0.524 4.524 11 H 0.072 0.928 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.881 3.119 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.265 1.265 18 O -0.225 6.225 19 H 0.075 0.925 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.856 -10.328 4.496 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.063 4.063 3 C -0.065 4.065 4 N -0.135 5.135 5 N -0.142 5.142 6 C -0.025 4.025 7 C -0.070 4.070 8 C -0.138 4.138 9 C -0.049 4.049 10 C -0.561 4.561 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.541 5.541 14 Si 0.708 3.292 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.190 1.190 18 O -0.104 6.104 19 H 0.094 0.906 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.115 0.885 23 H 0.127 0.873 24 H 0.112 0.888 25 H 0.127 0.873 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.579 -9.876 5.650 19.291 hybrid contribution -0.406 0.450 -1.587 1.699 sum -15.985 -9.426 4.063 18.997 Atomic orbital electron populations 1.21794 0.92892 1.03123 1.03067 1.20094 0.96936 0.83644 1.05596 1.27939 1.00487 0.98081 0.79984 1.74324 1.14719 0.98659 1.25838 1.74411 1.17654 1.12670 1.09465 1.28491 0.95532 0.86775 0.91721 1.20613 0.99993 0.88934 0.97467 1.21561 0.89395 1.01423 1.01422 1.19574 0.97735 0.92912 0.94701 1.21089 0.91661 1.10392 1.32998 0.91008 1.25035 0.94792 0.97935 0.95702 1.69915 1.09598 1.34992 1.39600 0.86760 0.80892 0.82872 0.78650 1.20176 1.21365 1.18963 1.84794 1.63798 1.23611 1.38236 0.90637 0.91683 0.92076 0.88546 0.87300 0.88793 0.87305 0.91640 0.92170 0.96235 0.96492 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.15 0.37 -0.67 16 2 C -0.02 -0.20 6.56 -27.89 -0.18 -0.38 16 3 C 0.15 2.03 7.73 -12.94 -0.10 1.93 16 4 N -0.29 -4.84 12.22 32.55 0.40 -4.44 16 5 N -0.30 -5.38 12.22 32.55 0.40 -4.98 16 6 C 0.19 3.07 7.73 -12.94 -0.10 2.97 16 7 C -0.03 -0.49 5.84 -27.88 -0.16 -0.65 16 8 C -0.10 -1.92 5.13 -26.73 -0.14 -2.06 16 9 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 10 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 11 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 13 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 14 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 18 O -0.22 -3.47 10.87 5.37 0.06 -3.41 16 19 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 20 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 29 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 263.92 15.07 3.98 3.98 Total: -1.00 -32.77 263.92 -4.08 -36.85 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: -4.16 Total: -5.08 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -0.86 Total: -12.56 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 1.57 Total: -36.42 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: 0.06 Total: -3.41 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.77 -4.08 -36.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329282785.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.505 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds