Wall clock time and date at job start Sun Mar 29 2020 21:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30274 * 126.28013 * 59.69284 * 4 2 1 6 6 N 1.28672 * 109.38336 * 179.83139 * 5 4 2 7 7 C 1.30275 * 109.37775 * 0.43554 * 6 5 4 8 8 C 1.50694 * 126.28569 * 179.73434 * 7 6 5 9 9 H 1.08996 * 109.47846 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47241 * 60.00046 * 8 7 6 11 11 C 1.50707 * 109.46900 * 300.00584 * 8 7 6 12 12 H 1.07990 * 120.00042 * 359.97438 * 11 8 7 13 13 C 1.37875 * 119.99689 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00378 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99950 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.46946 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47440 * 119.99754 * 15 13 11 18 18 H 1.48502 * 109.46881 * 240.00170 * 15 13 11 19 19 O 1.34366 * 107.43738 * 359.73772 * 7 6 5 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 25 25 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 27 27 H 1.08991 * 109.47574 * 179.97438 * 10 8 7 28 28 H 1.09005 * 109.47107 * 300.00780 * 10 8 7 29 29 H 1.09008 * 109.46879 * 60.00201 * 10 8 7 30 30 H 0.96998 * 120.00001 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7897 -0.3771 -2.4661 6 7 2.3810 -1.2036 -3.2554 7 6 3.0134 -2.0978 -2.5499 8 6 3.8261 -3.2470 -3.0882 9 1 4.2336 -3.8241 -2.2582 10 6 4.9723 -2.7044 -3.9441 11 6 2.9457 -4.1333 -3.9312 12 1 1.9022 -3.8890 -4.0636 13 6 3.4727 -5.2560 -4.5335 14 7 4.7437 -5.5532 -4.3728 15 14 2.3814 -6.3550 -5.5779 16 1 1.0019 -5.8056 -5.5998 17 1 2.9148 -6.4102 -6.9626 18 1 2.3598 -7.7231 -5.0008 19 8 2.8080 -1.8074 -1.2542 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.6767 1.9563 0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 5.5604 -3.5355 -4.3331 28 1 4.5644 -2.1275 -4.7742 29 1 5.6091 -2.0633 -3.3343 30 1 5.1145 -6.3429 -4.7968 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329298236.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:11 Heat of formation + Delta-G solvation = 12.705922 kcal Electronic energy + Delta-G solvation = -13789.547124 eV Core-core repulsion = 11393.263553 eV Total energy + Delta-G solvation = -2396.283572 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.37428 -35.87776 -35.30370 -34.51300 -31.30941 -28.48554 -27.25089 -25.34726 -23.75402 -23.40723 -20.63974 -20.14567 -16.78324 -16.57397 -16.08168 -15.20594 -14.71773 -14.36219 -13.39544 -13.21270 -12.81778 -12.26533 -12.02582 -11.73314 -11.55940 -11.34622 -11.27319 -11.06149 -11.00413 -10.96953 -10.66108 -10.43147 -10.23808 -9.92947 -9.31154 -8.57156 -8.49144 -6.19971 -4.27260 2.00107 3.01827 3.23761 3.25447 3.32398 3.39959 4.31725 4.48778 4.83446 4.99477 5.12580 5.17178 5.52975 5.54486 5.60897 5.76079 5.83464 6.00918 6.15748 6.18570 6.39577 6.47764 6.63596 6.84542 6.93025 7.40617 7.66363 7.84013 8.04410 8.73486 9.19997 9.37877 10.86850 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.052567 B = 0.007724 C = 0.007214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.528797 B = 3624.122778 C = 3880.252390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.011 3.989 3 C -0.143 4.143 4 C 0.119 3.881 5 N -0.288 5.288 6 N -0.306 5.306 7 C 0.219 3.781 8 C 0.129 3.871 9 H 0.057 0.943 10 C -0.131 4.131 11 C -0.511 4.511 12 H 0.064 0.936 13 C 0.066 3.934 14 N -0.888 5.888 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.282 1.282 19 O -0.236 6.236 20 H 0.059 0.941 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.094 0.906 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.044 0.956 29 H 0.013 0.987 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 8.035 8.463 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.009 4.009 3 C -0.200 4.200 4 C -0.093 4.093 5 N -0.136 5.136 6 N -0.151 5.151 7 C 0.010 3.990 8 C 0.109 3.891 9 H 0.074 0.926 10 C -0.189 4.189 11 C -0.549 4.549 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.526 5.526 15 Si 0.733 3.267 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.208 1.208 19 O -0.116 6.116 20 H 0.078 0.922 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.112 0.888 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.037 8.543 7.367 11.981 hybrid contribution -0.048 -1.303 0.441 1.376 sum -4.085 7.240 7.808 11.405 Atomic orbital electron populations 1.21841 0.92470 1.02802 1.02994 1.19503 0.96509 0.94993 0.89925 1.21837 1.01480 0.93698 1.03021 1.27624 0.95865 0.87734 0.98112 1.74193 1.18894 1.21980 0.98484 1.74380 1.11334 1.03384 1.26008 1.29615 0.96129 0.98204 0.75053 1.17758 0.91323 0.84322 0.95673 0.92553 1.21804 0.97424 1.00990 0.98689 1.20913 0.95965 1.07474 1.30556 0.91738 1.24897 0.95341 0.97222 0.96156 1.69870 1.12069 1.26742 1.43938 0.86293 0.80651 0.79868 0.79866 1.19563 1.20589 1.20786 1.84814 1.54749 1.39236 1.32809 0.92219 0.91211 0.91208 0.88796 0.91201 0.92319 0.91219 0.88157 0.93696 0.96803 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.18 37.16 0.34 -1.28 16 2 C 0.01 0.14 3.39 -91.77 -0.31 -0.17 16 3 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 4 C 0.12 2.26 6.99 -12.94 -0.09 2.17 16 5 N -0.29 -6.29 12.22 32.55 0.40 -5.90 16 6 N -0.31 -7.56 12.22 32.55 0.40 -7.17 16 7 C 0.22 5.33 6.92 -12.94 -0.09 5.24 16 8 C 0.13 3.31 2.77 -92.92 -0.26 3.05 16 9 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 10 C -0.13 -3.17 8.95 37.16 0.33 -2.83 16 11 C -0.51 -14.10 8.55 -34.44 -0.29 -14.40 16 12 H 0.06 1.84 7.74 -52.49 -0.41 1.43 16 13 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 14 N -0.89 -24.31 11.32 55.43 0.63 -23.68 16 15 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 O -0.24 -5.16 10.87 5.37 0.06 -5.11 16 20 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.10 2.56 6.07 -51.93 -0.32 2.24 16 28 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.01 0.29 8.14 -51.92 -0.42 -0.14 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 262.25 15.07 3.95 3.95 Total: -1.00 -29.73 262.25 -3.79 -33.53 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -4.08 Total: -3.98 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.12 Total: -7.74 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 1.42 Total: -36.74 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.06 Total: -5.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.73 -3.79 -33.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329298236.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.231 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds