Wall clock time and date at job start Sun Mar 29 2020 21:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29951 * 125.30327 * 2 1 4 4 O 1.41883 * 107.41512 * 179.97438 * 3 2 1 5 5 N 1.41876 * 106.38514 * 359.78273 * 4 3 2 6 6 C 1.29957 * 107.41601 * 0.36167 * 5 4 3 7 7 C 1.50693 * 125.30332 * 179.89365 * 6 5 4 8 8 C 1.50702 * 109.47154 * 269.69654 * 7 6 5 9 9 O 1.21293 * 120.00255 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 6 11 11 C 1.37101 * 120.00327 * 180.27606 * 10 8 7 12 12 H 1.08001 * 119.99426 * 0.02562 * 11 10 8 13 13 C 1.38942 * 120.00412 * 180.02562 * 11 10 8 14 14 N 1.31414 * 120.00005 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00057 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46646 * 60.00463 * 15 13 11 17 17 H 1.48504 * 109.47036 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47259 * 300.00225 * 15 13 11 19 19 H 1.09005 * 109.46808 * 270.00056 * 1 2 3 20 20 H 1.08997 * 109.46860 * 30.00268 * 1 2 3 21 21 H 1.08999 * 109.46902 * 150.00299 * 1 2 3 22 22 H 1.09004 * 109.47069 * 149.69858 * 7 6 5 23 23 H 1.09000 * 109.47667 * 29.70047 * 7 6 5 24 24 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 25 25 H 0.96996 * 120.00330 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7935 0.0061 6 6 2.3213 -1.1499 0.0007 7 6 1.8210 -2.5713 0.0014 8 6 1.6542 -3.0459 -1.4192 9 8 1.9163 -2.3030 -2.3416 10 7 1.2196 -4.2978 -1.6649 11 6 1.0733 -4.7315 -2.9572 12 1 1.3067 -4.0700 -3.7784 13 6 0.6248 -6.0219 -3.2105 14 7 0.3403 -6.8266 -2.2113 15 14 0.4247 -6.6125 -4.9714 16 1 1.7345 -6.5448 -5.6679 17 1 -0.0642 -8.0147 -4.9707 18 1 -0.5556 -5.7472 -5.6753 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5138 22 1 0.8608 -2.6183 0.5152 23 1 2.5398 -3.2093 0.5156 24 1 1.0103 -4.8920 -0.9273 25 1 0.0268 -7.7273 -2.3880 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329636072.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:52 Heat of formation + Delta-G solvation = 20.148721 kcal Electronic energy + Delta-G solvation = -13426.689478 eV Core-core repulsion = 10829.469645 eV Total energy + Delta-G solvation = -2597.219833 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.53697 -40.11859 -36.17042 -35.46761 -34.37241 -33.33197 -30.54094 -29.58350 -26.82481 -23.68136 -22.13242 -20.98897 -19.94613 -18.04282 -17.86851 -16.94336 -16.45946 -16.14888 -15.88458 -15.19269 -15.00772 -14.44544 -14.19768 -13.83553 -13.50430 -13.21713 -12.88745 -12.84215 -12.54601 -12.43827 -12.12423 -11.96643 -11.61693 -11.54539 -10.50601 -10.05921 -8.48824 -5.97650 -0.51609 0.94293 1.39334 1.44790 1.53791 1.58604 1.94891 2.10920 2.30561 2.85497 3.18890 3.20895 3.62931 3.98638 4.18208 4.34920 4.46299 4.61175 4.66128 4.76480 5.11834 5.41142 5.87782 5.95086 6.53558 7.08607 7.48210 8.03022 8.67382 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.060176 B = 0.006966 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.187992 B = 4018.637918 C = 4052.416234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.101 3.899 3 N -0.306 5.306 4 O -0.016 6.016 5 N -0.298 5.298 6 C 0.113 3.887 7 C -0.064 4.064 8 C 0.442 3.558 9 O -0.636 6.636 10 N -0.556 5.556 11 C -0.337 4.337 12 H 0.078 0.922 13 C -0.003 4.003 14 N -0.911 5.911 15 Si 0.988 3.012 16 H -0.276 1.276 17 H -0.270 1.270 18 H -0.270 1.270 19 H 0.136 0.864 20 H 0.097 0.903 21 H 0.099 0.901 22 H 0.166 0.834 23 H 0.133 0.867 24 H 0.403 0.597 25 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 4.945 7.500 9.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 N -0.055 5.055 4 O -0.150 6.150 5 N -0.044 5.044 6 C -0.071 4.071 7 C -0.104 4.104 8 C 0.229 3.771 9 O -0.525 6.525 10 N -0.192 5.192 11 C -0.466 4.466 12 H 0.096 0.904 13 C -0.204 4.204 14 N -0.551 5.551 15 Si 0.812 3.188 16 H -0.202 1.202 17 H -0.194 1.194 18 H -0.195 1.195 19 H 0.154 0.846 20 H 0.116 0.884 21 H 0.118 0.882 22 H 0.184 0.816 23 H 0.151 0.849 24 H 0.238 0.762 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.824 6.071 6.921 9.629 hybrid contribution -0.357 -1.026 -0.673 1.278 sum -3.180 5.045 6.248 8.637 Atomic orbital electron populations 1.20866 0.80881 1.06230 1.07010 1.25213 1.02158 0.87811 0.92996 1.79799 0.88594 1.20549 1.16582 1.93304 1.21693 1.14009 1.85977 1.79849 1.19154 0.90983 1.14393 1.24320 0.89464 0.99323 0.94002 1.20367 1.06932 0.87255 0.95887 1.20228 0.83384 0.82912 0.90600 1.90572 1.57449 1.56557 1.47890 1.41788 1.57369 1.11523 1.08507 1.19597 1.44066 0.98064 0.84906 0.90378 1.25943 0.95843 0.95380 1.03280 1.69632 1.44266 1.08495 1.32730 0.85060 0.78654 0.77604 0.77491 1.20193 1.19432 1.19536 0.84635 0.88408 0.88235 0.81621 0.84933 0.76193 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 10.05 71.24 0.72 -0.98 15 2 C 0.10 2.96 7.19 43.49 0.31 3.27 15 3 N -0.31 -10.42 12.98 -47.16 -0.61 -11.03 15 4 O -0.02 -0.63 13.71 70.15 0.96 0.33 15 5 N -0.30 -11.45 12.98 -47.16 -0.61 -12.06 15 6 C 0.11 3.72 5.68 43.49 0.25 3.96 15 7 C -0.06 -1.83 5.87 29.10 0.17 -1.66 15 8 C 0.44 18.94 7.78 87.66 0.68 19.62 15 9 O -0.64 -33.59 15.61 -3.07 -0.05 -33.63 15 10 N -0.56 -25.67 5.29 -306.98 -1.62 -27.29 15 11 C -0.34 -17.88 9.68 84.04 0.81 -17.07 15 12 H 0.08 4.49 7.16 -2.91 -0.02 4.47 15 13 C 0.00 -0.16 5.50 84.92 0.47 0.31 15 14 N -0.91 -45.69 13.05 21.66 0.28 -45.41 15 15 Si 0.99 40.72 29.55 68.60 2.03 42.75 15 16 H -0.28 -11.51 7.11 99.48 0.71 -10.80 15 17 H -0.27 -10.47 7.11 99.48 0.71 -9.77 15 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 19 H 0.14 1.42 8.14 -2.38 -0.02 1.40 15 20 H 0.10 1.66 8.14 -2.39 -0.02 1.64 15 21 H 0.10 1.87 7.78 -2.39 -0.02 1.86 15 22 H 0.17 3.04 7.78 -2.38 -0.02 3.02 15 23 H 0.13 3.29 8.14 -2.39 -0.02 3.28 15 24 H 0.40 17.07 7.90 -92.71 -0.73 16.34 15 25 H 0.28 13.22 8.31 -92.71 -0.77 12.45 15 Total: -1.00 -69.57 239.58 4.29 -65.29 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.50 Total: 13.60 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 3.41 Total: 7.46 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -2.56 Total: -95.79 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: 0.91 Total: -33.30 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -69.57 4.29 -65.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329636072.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.436 kcal (2) G-P(sol) polarization free energy of solvation -69.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds