Wall clock time and date at job start Sun Mar 29 2020 21:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47302 * 2 1 4 4 N 1.40441 * 126.81913 * 89.97942 * 3 2 1 5 5 C 1.30720 * 106.79068 * 180.02562 * 4 3 2 6 6 N 1.33234 * 108.94479 * 0.24000 * 5 4 3 7 7 C 1.30832 * 109.83313 * 359.58957 * 6 5 4 8 8 C 1.50700 * 125.96850 * 180.12247 * 7 6 5 9 9 N 1.46903 * 109.47056 * 270.33378 * 8 7 6 10 10 C 1.46902 * 110.99751 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47200 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99617 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00005 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00452 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00042 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46998 * 89.99938 * 15 13 11 17 17 H 1.48496 * 109.47245 * 209.99853 * 15 13 11 18 18 H 1.48500 * 109.46923 * 330.00108 * 15 13 11 19 19 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46792 * 300.00449 * 1 2 3 21 21 H 1.09000 * 109.46804 * 59.99937 * 1 2 3 22 22 H 1.09004 * 109.46799 * 240.00037 * 2 1 3 23 23 H 1.08998 * 109.46680 * 120.00596 * 2 1 3 24 24 H 1.08002 * 125.52440 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.46492 * 30.33012 * 8 7 6 26 26 H 1.08999 * 109.47248 * 150.32833 * 8 7 6 27 27 H 1.00898 * 111.00217 * 56.04424 * 9 8 7 28 28 H 1.08995 * 109.47551 * 300.00499 * 10 9 8 29 29 H 1.09005 * 109.46550 * 59.99784 * 10 9 8 30 30 H 0.96994 * 120.00153 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2986 2.1748 1.1243 5 6 2.7077 3.3329 0.6766 6 7 2.6944 3.3108 -0.6555 7 6 2.2870 2.1409 -1.0761 8 6 2.1379 1.7204 -2.5155 9 7 0.7837 2.0457 -2.9829 10 6 0.6017 1.6497 -4.3858 11 6 -0.7960 1.9977 -4.8288 12 1 -1.4805 2.4666 -4.1375 13 6 -1.2009 1.7175 -6.1166 14 7 -0.3675 1.1459 -6.9583 15 14 -2.9333 2.1495 -6.6659 16 1 -2.9464 3.5248 -7.2260 17 1 -3.3772 1.1872 -7.7060 18 1 -3.8533 2.0801 -5.5023 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.0039 4.1728 1.2875 25 1 2.8698 2.2492 -3.1261 26 1 2.3030 0.6463 -2.5993 27 1 0.5830 3.0263 -2.8554 28 1 1.3230 2.1781 -5.0091 29 1 0.7563 0.5750 -4.4828 30 1 -0.6525 0.9485 -7.8642 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330579474.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:07 Heat of formation + Delta-G solvation = 82.012598 kcal Electronic energy + Delta-G solvation = -13560.274186 eV Core-core repulsion = 11199.288728 eV Total energy + Delta-G solvation = -2360.985457 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.85776 -35.67295 -34.74666 -32.69498 -30.99666 -29.94116 -27.48182 -24.74517 -23.78387 -21.64316 -21.48688 -19.92739 -17.11423 -16.34659 -15.56550 -15.05886 -14.63619 -14.29598 -14.10519 -13.73502 -13.30928 -12.74645 -12.31952 -12.03326 -11.95265 -11.47127 -11.34309 -10.99145 -10.80505 -10.73838 -10.08309 -9.77126 -9.52589 -9.38796 -9.23600 -8.55425 -7.52930 -6.09980 -4.12282 1.82082 2.51222 3.16292 3.28974 3.35250 3.39519 4.32191 4.41823 4.61800 4.99504 5.10365 5.17938 5.26552 5.28693 5.38374 5.70217 5.80663 5.93195 6.01758 6.36991 6.52251 6.66130 7.01001 7.05944 7.29320 7.66682 8.00285 8.18809 8.34753 8.43805 8.95924 9.53012 11.01044 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.044860 B = 0.006781 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.011222 B = 4128.033190 C = 4314.986096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.129 3.871 3 N -0.366 5.366 4 N -0.333 5.333 5 C 0.193 3.807 6 N -0.549 5.549 7 C 0.298 3.702 8 C 0.131 3.869 9 N -0.682 5.682 10 C 0.195 3.805 11 C -0.516 4.516 12 H 0.063 0.937 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.900 3.100 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 H 0.074 0.926 20 H 0.057 0.943 21 H 0.086 0.914 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.213 0.787 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.339 0.661 28 H -0.008 1.008 29 H 0.031 0.969 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.388 -1.663 11.510 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.007 3.993 3 N -0.157 5.157 4 N -0.161 5.161 5 C -0.110 4.110 6 N -0.278 5.278 7 C 0.021 3.979 8 C -0.001 4.001 9 N -0.314 5.314 10 C 0.069 3.931 11 C -0.554 4.554 12 H 0.081 0.919 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 H 0.093 0.907 20 H 0.076 0.924 21 H 0.105 0.895 22 H 0.116 0.884 23 H 0.108 0.892 24 H 0.229 0.771 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.156 0.844 28 H 0.010 0.990 29 H 0.049 0.951 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.124 -2.329 12.127 13.019 hybrid contribution -0.422 0.755 -0.888 1.240 sum 3.702 -1.574 11.239 11.937 Atomic orbital electron populations 1.22195 0.93292 1.03196 1.04326 1.21745 0.96293 0.77220 1.04013 1.50387 1.48461 1.13116 1.03710 1.77933 1.24237 1.05058 1.08895 1.25849 0.98464 0.96059 0.90651 1.70490 1.25696 1.20223 1.11365 1.24521 0.93476 0.86910 0.92988 1.20416 0.94438 1.01018 0.84213 1.60789 1.20203 1.24743 1.25714 1.19607 0.96747 0.96407 0.80321 1.21118 0.97655 1.40070 0.96581 0.91902 1.24966 0.97781 0.95155 0.96508 1.69951 1.35375 1.42418 1.05860 0.86470 0.84248 0.78151 0.78385 1.20641 1.21203 1.19787 0.90701 0.92403 0.89467 0.88438 0.89229 0.77099 0.92172 0.89581 0.84438 0.98971 0.95088 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.78 16 2 C 0.13 1.58 7.02 -4.04 -0.03 1.55 16 3 N -0.37 -5.70 3.64 -58.34 -0.21 -5.91 16 4 N -0.33 -5.32 12.70 29.29 0.37 -4.95 16 5 C 0.19 2.91 13.03 -91.81 -1.20 1.71 16 6 N -0.55 -9.55 11.19 -11.97 -0.13 -9.68 16 7 C 0.30 5.03 7.50 -155.69 -1.17 3.87 16 8 C 0.13 2.25 6.01 -4.97 -0.03 2.22 16 9 N -0.68 -13.90 6.48 -116.33 -0.75 -14.65 16 10 C 0.20 4.82 5.44 -4.97 -0.03 4.80 16 11 C -0.52 -14.10 9.32 -34.44 -0.32 -14.42 16 12 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 22 H 0.10 1.07 7.11 -51.93 -0.37 0.70 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.21 2.27 8.06 -52.49 -0.42 1.85 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.09 1.33 7.13 -51.93 -0.37 0.96 16 27 H 0.34 7.07 8.71 -39.29 -0.34 6.73 16 28 H -0.01 -0.20 8.14 -51.93 -0.42 -0.62 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 266.27 15.07 4.01 4.01 Total: -1.00 -30.78 266.27 -7.49 -38.28 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.01 Total: 2.47 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.49 Total: -0.55 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.01 Total: -60.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.78 -7.49 -38.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330579474.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.288 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds