Wall clock time and date at job start Sun Mar 29 2020 21:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47302 * 2 1 4 4 N 1.40441 * 126.81913 * 89.97942 * 3 2 1 5 5 C 1.30720 * 106.79068 * 180.02562 * 4 3 2 6 6 N 1.33234 * 108.94479 * 0.24000 * 5 4 3 7 7 C 1.30832 * 109.83313 * 359.58957 * 6 5 4 8 8 C 1.50700 * 125.96850 * 180.12247 * 7 6 5 9 9 N 1.46903 * 109.47056 * 270.33378 * 8 7 6 10 10 C 1.46902 * 110.99751 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47200 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99617 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00005 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00452 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00042 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46998 * 89.99938 * 15 13 11 17 17 H 1.48496 * 109.47245 * 209.99853 * 15 13 11 18 18 H 1.48500 * 109.46923 * 330.00108 * 15 13 11 19 19 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46792 * 300.00449 * 1 2 3 21 21 H 1.09000 * 109.46804 * 59.99937 * 1 2 3 22 22 H 1.09004 * 109.46799 * 240.00037 * 2 1 3 23 23 H 1.08998 * 109.46680 * 120.00596 * 2 1 3 24 24 H 1.08002 * 125.52440 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.46492 * 30.33012 * 8 7 6 26 26 H 1.08999 * 109.47248 * 150.32833 * 8 7 6 27 27 H 1.00898 * 111.00217 * 56.04424 * 9 8 7 28 28 H 1.08995 * 109.47551 * 300.00499 * 10 9 8 29 29 H 1.09005 * 109.46550 * 59.99784 * 10 9 8 30 30 H 0.96994 * 120.00153 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2986 2.1748 1.1243 5 6 2.7077 3.3329 0.6766 6 7 2.6944 3.3108 -0.6555 7 6 2.2870 2.1409 -1.0761 8 6 2.1379 1.7204 -2.5155 9 7 0.7837 2.0457 -2.9829 10 6 0.6017 1.6497 -4.3858 11 6 -0.7960 1.9977 -4.8288 12 1 -1.4805 2.4666 -4.1375 13 6 -1.2009 1.7175 -6.1166 14 7 -0.3675 1.1459 -6.9583 15 14 -2.9333 2.1495 -6.6659 16 1 -2.9464 3.5248 -7.2260 17 1 -3.3772 1.1872 -7.7060 18 1 -3.8533 2.0801 -5.5023 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.0039 4.1728 1.2875 25 1 2.8698 2.2492 -3.1261 26 1 2.3030 0.6463 -2.5993 27 1 0.5830 3.0263 -2.8554 28 1 1.3230 2.1781 -5.0091 29 1 0.7563 0.5750 -4.4828 30 1 -0.6525 0.9485 -7.8642 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330579474.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:07 Heat of formation + Delta-G solvation = 61.506389 kcal Electronic energy + Delta-G solvation = -13561.163402 eV Core-core repulsion = 11199.288728 eV Total energy + Delta-G solvation = -2361.874673 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.08266 -37.31985 -35.90549 -34.65986 -32.43716 -31.10154 -29.24022 -26.43220 -24.91195 -23.51022 -22.70754 -21.19884 -18.72218 -17.98171 -16.87706 -16.73346 -16.15150 -15.71482 -15.49078 -14.99062 -14.88100 -14.17326 -13.80388 -13.51356 -13.18325 -13.10661 -12.83265 -12.66310 -12.56275 -12.07435 -12.00586 -11.35154 -11.02702 -10.75284 -10.65781 -10.55405 -9.26373 -8.21525 -6.31350 0.56689 1.38328 1.43871 1.43881 1.55581 1.92991 2.41621 3.08544 3.12968 3.56537 3.71310 3.83088 4.09556 4.13984 4.33182 4.50387 4.56558 4.80047 4.90517 5.07238 5.25393 5.29500 5.37951 5.51660 5.59748 5.82071 5.99308 6.32649 6.55229 6.85589 7.12083 7.38905 8.89731 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.044860 B = 0.006781 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.011222 B = 4128.033190 C = 4314.986096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.121 3.879 3 N -0.364 5.364 4 N -0.344 5.344 5 C 0.192 3.808 6 N -0.573 5.573 7 C 0.286 3.714 8 C 0.137 3.863 9 N -0.675 5.675 10 C 0.211 3.789 11 C -0.534 4.534 12 H 0.061 0.939 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.967 3.033 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.267 1.267 19 H 0.100 0.900 20 H 0.050 0.950 21 H 0.054 0.946 22 H 0.111 0.889 23 H 0.113 0.887 24 H 0.249 0.751 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.335 0.665 28 H -0.031 1.031 29 H 0.017 0.983 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.933 -1.840 12.421 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.000 4.000 3 N -0.155 5.155 4 N -0.173 5.173 5 C -0.111 4.111 6 N -0.302 5.302 7 C 0.009 3.991 8 C 0.005 3.995 9 N -0.307 5.307 10 C 0.084 3.916 11 C -0.573 4.573 12 H 0.079 0.921 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.792 3.208 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.191 1.191 19 H 0.119 0.881 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.129 0.871 23 H 0.132 0.868 24 H 0.265 0.735 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.152 0.848 28 H -0.013 1.013 29 H 0.035 0.965 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.672 -2.517 13.063 13.801 hybrid contribution -0.233 0.800 -1.098 1.378 sum 3.439 -1.718 11.965 12.567 Atomic orbital electron populations 1.22110 0.93542 1.04259 1.02260 1.22074 0.96007 0.76005 1.05904 1.50615 1.47741 1.13932 1.03185 1.77906 1.24622 1.05523 1.09247 1.26592 0.97507 0.96807 0.90147 1.70471 1.26315 1.20690 1.12735 1.24276 0.94495 0.87442 0.92914 1.20364 0.92398 1.02051 0.84650 1.60636 1.22668 1.24396 1.22957 1.19250 0.95160 0.95041 0.82167 1.21466 0.98766 1.40092 0.96958 0.92113 1.25824 1.01853 0.94915 0.96584 1.70058 1.37343 1.43327 1.06274 0.85413 0.79313 0.78029 0.78027 1.20022 1.20625 1.19130 0.88137 0.93045 0.92732 0.87085 0.86844 0.73534 0.92332 0.87886 0.84800 1.01325 0.96528 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 10.24 71.98 0.74 -3.15 16 2 C 0.12 2.71 7.02 86.38 0.61 3.32 16 3 N -0.36 -10.78 3.64 -338.48 -1.23 -12.01 16 4 N -0.34 -10.41 12.70 -61.24 -0.78 -11.18 16 5 C 0.19 5.44 13.03 180.77 2.36 7.80 16 6 N -0.57 -19.31 11.19 -191.78 -2.15 -21.45 16 7 C 0.29 9.40 7.50 138.23 1.04 10.44 16 8 C 0.14 4.64 6.01 85.56 0.51 5.16 16 9 N -0.68 -27.62 6.48 -521.97 -3.38 -31.01 16 10 C 0.21 10.59 5.44 85.56 0.47 11.05 16 11 C -0.53 -29.37 9.32 25.60 0.24 -29.14 16 12 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 13 C 0.01 0.39 5.46 84.65 0.46 0.85 16 14 N -0.93 -54.14 13.29 21.45 0.28 -53.86 16 15 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.11 2.19 7.11 -2.39 -0.02 2.17 16 23 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 24 H 0.25 4.67 8.06 -2.91 -0.02 4.65 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.10 3.10 7.13 -2.39 -0.02 3.08 16 27 H 0.34 14.11 8.71 -89.70 -0.78 13.33 16 28 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 29 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -64.91 266.27 1.54 -63.36 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.35 Total: 14.50 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.41 Total: 6.33 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -7.25 Total: -129.51 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -64.91 1.54 -63.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330579474.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.870 kcal (2) G-P(sol) polarization free energy of solvation -64.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds