Wall clock time and date at job start Sun Mar 29 2020 21:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47383 * 2 1 4 4 C 1.50710 * 109.46769 * 240.00773 * 2 1 3 5 5 H 1.07999 * 119.99680 * 240.00295 * 4 2 1 6 6 C 1.37872 * 120.00005 * 59.99800 * 4 2 1 7 7 N 1.31516 * 120.00535 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99996 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47208 * 59.99682 * 8 6 4 10 10 H 1.48499 * 109.47203 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46862 * 299.99857 * 8 6 4 12 12 N 1.46892 * 109.47758 * 120.00529 * 2 1 3 13 13 C 1.46900 * 111.00193 * 274.99922 * 12 2 1 14 14 C 1.53002 * 109.47054 * 179.97438 * 13 12 2 15 15 C 1.50700 * 109.46730 * 180.02562 * 14 13 12 16 16 C 1.35349 * 126.91313 * 275.04082 * 15 14 13 17 17 N 1.33777 * 106.49799 * 179.97438 * 16 15 14 18 18 N 1.28634 * 108.88349 * 359.97438 * 17 16 15 19 19 N 1.28715 * 110.18090 * 359.97438 * 18 17 16 20 20 H 0.97000 * 125.86568 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.47474 * 59.99159 * 1 2 3 22 22 H 1.08996 * 109.46991 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46498 * 299.99154 * 1 2 3 24 24 H 0.96994 * 120.00368 * 179.97438 * 7 6 4 25 25 H 1.00907 * 110.99594 * 38.94840 * 12 2 1 26 26 H 1.09001 * 109.46705 * 59.99455 * 13 12 2 27 27 H 1.08998 * 109.46989 * 299.99914 * 13 12 2 28 28 H 1.08996 * 109.47131 * 60.00416 * 14 13 12 29 29 H 1.09003 * 109.46839 * 299.99531 * 14 13 12 30 30 H 1.07997 * 126.75241 * 359.94788 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2307 5 1 2.6531 -1.5884 -1.1317 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6034 8 14 2.3211 -1.1199 -4.0082 9 1 1.8256 -2.5198 -4.0081 10 1 1.8256 -0.4201 -5.2206 11 1 3.8062 -1.1205 -4.0085 12 7 2.0198 -0.6925 1.1993 13 6 2.0827 0.2224 2.3468 14 6 2.5954 -0.5335 3.5743 15 6 2.6593 0.4050 4.7516 16 6 3.6740 1.2425 5.0695 17 7 3.3042 1.8809 6.1854 18 7 2.1377 1.4666 6.5350 19 7 1.7129 0.5815 5.7026 20 1 0.8611 0.1198 5.7493 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5137 0.8901 24 1 0.7085 1.1616 -3.4843 25 1 1.4496 -1.4980 1.4098 26 1 1.0873 0.6161 2.5525 27 1 2.7590 1.0460 2.1181 28 1 3.5907 -0.9274 3.3688 29 1 1.9186 -1.3569 3.8027 30 1 4.6001 1.3700 4.5288 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330670935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:41 Heat of formation + Delta-G solvation = 83.518123 kcal Electronic energy + Delta-G solvation = -13336.835032 eV Core-core repulsion = 10975.914859 eV Total energy + Delta-G solvation = -2360.920173 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.28691 -36.57671 -33.98077 -33.15625 -31.94258 -29.39024 -26.78336 -25.18945 -23.06573 -22.74954 -21.31762 -20.30347 -18.17893 -16.42924 -16.00734 -15.09741 -14.87833 -14.45460 -14.02873 -13.68312 -13.07553 -12.40809 -11.99959 -11.80514 -11.58125 -11.30293 -10.94357 -10.91155 -10.71330 -10.60423 -10.46936 -10.20452 -9.95675 -9.20848 -8.99599 -8.40518 -7.38072 -6.02838 -4.06836 1.54464 2.55192 2.71960 3.31893 3.36296 3.39173 4.36261 4.47012 4.69946 4.97994 5.23681 5.28893 5.36831 5.48985 5.67481 5.73153 6.12031 6.23005 6.29050 6.60165 6.74623 6.79889 7.00612 7.26442 7.66122 7.81351 8.19538 8.42014 8.42596 8.52385 8.99842 9.58852 11.04225 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.070622 B = 0.005510 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.383366 B = 5080.231696 C = 5180.766001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.683 5.683 13 C 0.065 3.935 14 C -0.049 4.049 15 C 0.006 3.994 16 C -0.050 4.050 17 N -0.268 5.268 18 N -0.093 5.093 19 N -0.393 5.393 20 H 0.446 0.554 21 H 0.090 0.910 22 H 0.028 0.972 23 H 0.003 0.997 24 H 0.261 0.739 25 H 0.325 0.675 26 H 0.017 0.983 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -2.854 11.238 11.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.066 4.066 14 C -0.089 4.089 15 C -0.128 4.128 16 C -0.207 4.207 17 N -0.136 5.136 18 N -0.073 5.073 19 N -0.113 5.113 20 H 0.291 0.709 21 H 0.108 0.892 22 H 0.047 0.953 23 H 0.022 0.978 24 H 0.071 0.929 25 H 0.141 0.859 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.092 0.908 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.122 -1.753 12.219 12.395 hybrid contribution -1.104 -1.168 -1.630 2.289 sum 0.018 -2.921 10.590 10.985 Atomic orbital electron populations 1.22437 1.00714 0.99195 1.00507 1.19181 0.89586 0.94503 0.86349 0.94788 1.21103 1.30448 1.12545 0.89538 0.91904 1.24957 0.95274 0.95183 0.99109 1.69866 1.37152 1.23165 1.23566 0.86547 0.79220 0.79556 0.81965 1.20368 1.21454 1.20218 1.60823 1.58133 1.08981 1.03293 1.21881 0.98543 0.96166 0.89999 1.20266 1.04752 0.94878 0.88969 1.22478 0.90921 1.03787 0.95656 1.23449 1.01840 0.98284 0.97116 1.75058 1.04514 1.21428 1.12578 1.78235 1.08375 1.04997 1.15678 1.45117 1.17782 1.29867 1.18549 0.70896 0.89174 0.95284 0.97786 0.92943 0.85899 0.96496 0.90965 0.87815 0.90821 0.79132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 8.94 37.16 0.33 -3.58 16 2 C 0.21 5.08 2.57 -68.86 -0.18 4.91 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.50 16 4 C -0.50 -13.34 8.84 -34.44 -0.30 -13.64 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.26 11.32 55.43 0.63 -24.63 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.68 -13.14 6.23 -107.95 -0.67 -13.82 16 13 C 0.06 1.02 5.47 -3.82 -0.02 0.99 16 14 C -0.05 -0.56 6.04 -27.88 -0.17 -0.73 16 15 C 0.01 0.07 6.56 -82.09 -0.54 -0.47 16 16 C -0.05 -0.64 11.99 -17.73 -0.21 -0.86 16 17 N -0.27 -4.06 12.41 30.23 0.38 -3.68 16 18 N -0.09 -1.31 13.38 60.35 0.81 -0.50 16 19 N -0.39 -4.37 6.98 33.54 0.23 -4.13 16 20 H 0.45 3.33 8.96 -190.40 -1.71 1.63 16 21 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 22 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 23 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.32 5.78 8.47 -39.29 -0.33 5.45 16 26 H 0.02 0.27 7.44 -51.93 -0.39 -0.11 16 27 H 0.07 1.21 8.05 -51.93 -0.42 0.80 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.19 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 259.73 15.07 3.91 3.91 Total: -1.00 -30.31 259.73 -6.11 -36.42 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.19 Total: 2.39 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.18 Total: -11.96 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 1.37 Total: -46.77 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.31 -6.11 -36.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330670935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.934 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds