Wall clock time and date at job start Sun Mar 29 2020 21:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47383 * 2 1 4 4 C 1.50710 * 109.46769 * 240.00773 * 2 1 3 5 5 H 1.07999 * 119.99680 * 240.00295 * 4 2 1 6 6 C 1.37872 * 120.00005 * 59.99800 * 4 2 1 7 7 N 1.31516 * 120.00535 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99996 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47208 * 59.99682 * 8 6 4 10 10 H 1.48499 * 109.47203 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46862 * 299.99857 * 8 6 4 12 12 N 1.46892 * 109.47758 * 120.00529 * 2 1 3 13 13 C 1.46900 * 111.00193 * 274.99922 * 12 2 1 14 14 C 1.53002 * 109.47054 * 179.97438 * 13 12 2 15 15 C 1.50700 * 109.46730 * 180.02562 * 14 13 12 16 16 C 1.35349 * 126.91313 * 275.04082 * 15 14 13 17 17 N 1.33777 * 106.49799 * 179.97438 * 16 15 14 18 18 N 1.28634 * 108.88349 * 359.97438 * 17 16 15 19 19 N 1.28715 * 110.18090 * 359.97438 * 18 17 16 20 20 H 0.97000 * 125.86568 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.47474 * 59.99159 * 1 2 3 22 22 H 1.08996 * 109.46991 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46498 * 299.99154 * 1 2 3 24 24 H 0.96994 * 120.00368 * 179.97438 * 7 6 4 25 25 H 1.00907 * 110.99594 * 38.94840 * 12 2 1 26 26 H 1.09001 * 109.46705 * 59.99455 * 13 12 2 27 27 H 1.08998 * 109.46989 * 299.99914 * 13 12 2 28 28 H 1.08996 * 109.47131 * 60.00416 * 14 13 12 29 29 H 1.09003 * 109.46839 * 299.99531 * 14 13 12 30 30 H 1.07997 * 126.75241 * 359.94788 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2307 5 1 2.6531 -1.5884 -1.1317 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6034 8 14 2.3211 -1.1199 -4.0082 9 1 1.8256 -2.5198 -4.0081 10 1 1.8256 -0.4201 -5.2206 11 1 3.8062 -1.1205 -4.0085 12 7 2.0198 -0.6925 1.1993 13 6 2.0827 0.2224 2.3468 14 6 2.5954 -0.5335 3.5743 15 6 2.6593 0.4050 4.7516 16 6 3.6740 1.2425 5.0695 17 7 3.3042 1.8809 6.1854 18 7 2.1377 1.4666 6.5350 19 7 1.7129 0.5815 5.7026 20 1 0.8611 0.1198 5.7493 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5137 0.8901 24 1 0.7085 1.1616 -3.4843 25 1 1.4496 -1.4980 1.4098 26 1 1.0873 0.6161 2.5525 27 1 2.7590 1.0460 2.1181 28 1 3.5907 -0.9274 3.3688 29 1 1.9186 -1.3569 3.8027 30 1 4.6001 1.3700 4.5288 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330670935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:41 Heat of formation + Delta-G solvation = 60.800782 kcal Electronic energy + Delta-G solvation = -13337.820129 eV Core-core repulsion = 10975.914859 eV Total energy + Delta-G solvation = -2361.905271 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.27621 -38.13257 -35.42828 -34.31101 -33.49750 -30.85953 -28.17439 -27.20518 -24.21052 -23.86740 -22.36915 -22.13806 -19.18135 -18.31824 -17.12199 -16.75893 -16.33955 -15.63385 -15.38117 -15.01366 -14.58881 -14.04690 -13.52054 -13.31301 -12.88271 -12.72586 -12.70535 -12.58874 -12.19894 -12.09731 -11.82954 -11.74186 -11.56337 -11.05510 -10.46115 -10.12461 -8.97418 -8.07570 -6.18858 0.56674 1.46923 1.48099 1.53074 1.55776 1.87822 2.46600 3.21459 3.39984 3.68758 4.00702 4.08119 4.26675 4.37965 4.52374 4.65790 4.76903 4.87632 5.05406 5.12417 5.13896 5.24404 5.43914 5.71684 5.83160 5.99541 6.28704 6.63797 6.86510 6.97675 7.41899 7.51642 8.97736 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.070622 B = 0.005510 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.383366 B = 5080.231696 C = 5180.766001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 H -0.001 1.001 4 C -0.514 4.514 5 H 0.059 0.941 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.683 5.683 13 C 0.068 3.932 14 C -0.031 4.031 15 C 0.012 3.988 16 C -0.058 4.058 17 N -0.301 5.301 18 N -0.112 5.112 19 N -0.375 5.375 20 H 0.462 0.538 21 H 0.058 0.942 22 H 0.036 0.964 23 H 0.024 0.976 24 H 0.260 0.740 25 H 0.337 0.663 26 H 0.015 0.985 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 -4.242 11.601 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.106 3.894 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.078 0.922 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.313 5.313 13 C -0.063 4.063 14 C -0.071 4.071 15 C -0.124 4.124 16 C -0.216 4.216 17 N -0.168 5.168 18 N -0.092 5.092 19 N -0.098 5.098 20 H 0.310 0.690 21 H 0.077 0.923 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.154 0.846 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.223 -3.157 12.619 13.065 hybrid contribution -1.150 -0.727 -1.709 2.184 sum 0.073 -3.884 10.910 11.581 Atomic orbital electron populations 1.22245 1.00051 0.99426 0.99945 1.18928 0.89989 0.92730 0.87789 0.98255 1.21458 1.30354 1.12536 0.90923 0.92248 1.25729 0.95494 0.95858 1.02009 1.70006 1.38154 1.24405 1.24003 0.85578 0.78684 0.78695 0.78436 1.19498 1.21403 1.19839 1.60622 1.57944 1.09578 1.03150 1.21860 0.98331 0.95711 0.90364 1.20086 1.05757 0.94689 0.86563 1.22455 0.90713 1.03503 0.95685 1.23900 1.02945 0.98047 0.96704 1.75039 1.05210 1.22674 1.13855 1.78179 1.08477 1.05935 1.16602 1.45135 1.18206 1.28867 1.17633 0.68984 0.92290 0.94502 0.95734 0.93110 0.84595 0.96649 0.92618 0.86891 0.88158 0.77385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.17 8.94 71.98 0.64 -6.52 16 2 C 0.21 10.26 2.57 44.17 0.11 10.38 16 3 H 0.00 -0.03 7.80 -2.39 -0.02 -0.05 16 4 C -0.51 -27.39 8.84 25.60 0.23 -27.17 16 5 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.38 5.30 84.65 0.45 0.83 16 7 N -0.93 -52.54 11.32 21.45 0.24 -52.30 16 8 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 N -0.68 -25.19 6.23 -495.45 -3.09 -28.28 16 13 C 0.07 2.00 5.47 86.30 0.47 2.47 16 14 C -0.03 -0.62 6.04 29.85 0.18 -0.44 16 15 C 0.01 0.25 6.56 41.35 0.27 0.52 16 16 C -0.06 -1.42 11.99 83.73 1.00 -0.41 16 17 N -0.30 -8.83 12.41 -58.26 -0.72 -9.55 16 18 N -0.11 -3.03 13.38 37.02 0.50 -2.53 16 19 N -0.38 -7.53 6.98 -47.79 -0.33 -7.86 16 20 H 0.46 5.68 8.96 -219.96 -1.97 3.71 16 21 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 22 H 0.04 1.57 8.13 -2.39 -0.02 1.55 16 23 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 24 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 25 H 0.34 11.13 8.47 -89.69 -0.76 10.37 16 26 H 0.02 0.46 7.44 -2.39 -0.02 0.44 16 27 H 0.06 1.83 8.05 -2.39 -0.02 1.81 16 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.21 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -64.63 259.73 0.41 -64.22 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -1.57 Total: 11.82 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 3.36 Total: -20.34 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -3.41 Total: -100.52 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -64.63 0.41 -64.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330670935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.021 kcal (2) G-P(sol) polarization free energy of solvation -64.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds