Wall clock time and date at job start Sun Mar 29 2020 21:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46893 * 2 1 4 4 C 1.50705 * 109.46771 * 119.99519 * 2 1 3 5 5 H 1.08004 * 119.99545 * 119.99938 * 4 2 1 6 6 C 1.37871 * 120.00369 * 300.00126 * 4 2 1 7 7 N 1.31516 * 119.99848 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00064 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46956 * 90.00063 * 8 6 4 10 10 H 1.48505 * 109.47037 * 209.99677 * 8 6 4 11 11 H 1.48490 * 109.46976 * 329.99573 * 8 6 4 12 12 N 1.46892 * 109.46854 * 239.99615 * 2 1 3 13 13 C 1.46900 * 111.00193 * 85.00404 * 12 2 1 14 14 C 1.53002 * 109.47054 * 179.97438 * 13 12 2 15 15 C 1.50700 * 109.46730 * 180.02562 * 14 13 12 16 16 C 1.35349 * 126.91313 * 275.04082 * 15 14 13 17 17 N 1.33777 * 106.49799 * 179.97438 * 16 15 14 18 18 N 1.28634 * 108.88349 * 359.97438 * 17 16 15 19 19 N 1.28715 * 110.18090 * 359.97438 * 18 17 16 20 20 H 0.97000 * 125.86568 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.47150 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47185 * 300.00640 * 1 2 3 23 23 H 1.09000 * 109.46535 * 60.00197 * 1 2 3 24 24 H 0.97007 * 119.99789 * 180.02562 * 7 6 4 25 25 H 1.00907 * 110.99594 * 208.95322 * 12 2 1 26 26 H 1.09001 * 109.46705 * 59.99455 * 13 12 2 27 27 H 1.08998 * 109.46989 * 299.99914 * 13 12 2 28 28 H 1.08996 * 109.47131 * 60.00416 * 14 13 12 29 29 H 1.09003 * 109.46839 * 299.99531 * 14 13 12 30 30 H 1.07997 * 126.75241 * 359.94788 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1194 4.0081 9 1 3.6304 -0.5438 4.4120 10 1 1.3444 -0.9487 5.1124 11 1 2.4879 -2.5652 3.7124 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2224 -2.3469 14 6 2.5962 -0.5332 -3.5741 15 6 2.6613 0.4057 -4.7511 16 6 1.6516 0.7227 -5.5949 17 7 2.1561 1.5859 -6.4837 18 7 3.3959 1.7903 -6.2081 19 7 3.7404 1.1030 -5.1758 20 1 4.6223 1.0872 -4.7720 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 0.7095 1.1620 3.4844 25 1 2.9174 -1.1206 -1.0286 26 1 2.7589 1.0460 -2.1181 27 1 1.0872 0.6162 -2.5525 28 1 1.9201 -1.3569 -3.8029 29 1 3.5917 -0.9265 -3.3681 30 1 0.6382 0.3514 -5.5582 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330670936.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:42 Heat of formation + Delta-G solvation = 59.613678 kcal Electronic energy + Delta-G solvation = -13336.714587 eV Core-core repulsion = 10974.757839 eV Total energy + Delta-G solvation = -2361.956747 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.27800 -38.05881 -35.44781 -34.31228 -33.46803 -30.89306 -28.35274 -27.24061 -24.24518 -23.88680 -22.38718 -21.72476 -19.20962 -18.47274 -17.09212 -16.89688 -16.25010 -15.75241 -15.35772 -15.08223 -14.48621 -14.15486 -13.71468 -13.10532 -12.86989 -12.80139 -12.60158 -12.38753 -12.24109 -12.15010 -11.84237 -11.73947 -11.56169 -10.88607 -10.56787 -10.12625 -9.07783 -8.12630 -6.27047 0.56451 1.43619 1.45599 1.53207 1.55716 1.87597 2.42602 3.16563 3.39278 3.68189 4.00499 4.07296 4.25902 4.37355 4.52928 4.66654 4.85193 5.08252 5.10571 5.12480 5.21873 5.25709 5.49325 5.67962 5.87405 5.98702 6.23946 6.45778 6.77912 7.02598 7.41777 7.44044 8.93013 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.069847 B = 0.005535 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.780655 B = 5057.608439 C = 5188.283005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.214 3.786 3 H -0.033 1.033 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.963 3.037 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.682 5.682 13 C 0.067 3.933 14 C -0.031 4.031 15 C 0.011 3.989 16 C -0.057 4.057 17 N -0.301 5.301 18 N -0.113 5.113 19 N -0.376 5.376 20 H 0.461 0.539 21 H 0.031 0.969 22 H 0.053 0.947 23 H 0.022 0.978 24 H 0.262 0.738 25 H 0.337 0.663 26 H 0.009 0.991 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -3.285 -10.383 11.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 H -0.016 1.016 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.313 5.313 13 C -0.063 4.063 14 C -0.071 4.071 15 C -0.125 4.125 16 C -0.215 4.215 17 N -0.167 5.167 18 N -0.093 5.093 19 N -0.099 5.099 20 H 0.310 0.690 21 H 0.050 0.950 22 H 0.072 0.928 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.027 0.973 27 H 0.079 0.921 28 H 0.134 0.866 29 H 0.116 0.884 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.477 -2.387 -11.592 12.654 hybrid contribution 1.038 -0.164 2.260 2.492 sum 5.515 -2.552 -9.332 11.136 Atomic orbital electron populations 1.21554 0.97787 0.99061 0.98979 1.18912 0.92769 0.90702 0.87055 1.01555 1.21619 1.31623 1.12764 0.91463 0.91752 1.25751 0.95175 0.95665 1.02182 1.70038 1.37564 1.24199 1.24146 0.85485 0.77849 0.79198 0.78655 1.20229 1.21209 1.18932 1.60602 1.32469 1.33084 1.05145 1.21889 0.99924 0.93660 0.90831 1.20085 1.04746 0.95177 0.87053 1.22470 0.87810 1.00960 1.01216 1.23910 1.02485 1.00538 0.94517 1.75037 1.01351 1.16127 1.24225 1.78184 1.09879 1.17095 1.04094 1.45152 1.14015 1.29653 1.21118 0.69043 0.94964 0.92824 0.95859 0.92923 0.84489 0.97277 0.92073 0.86607 0.88385 0.77188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 9.19 71.98 0.66 -4.91 16 2 C 0.21 10.39 2.60 44.18 0.11 10.51 16 3 H -0.03 -1.80 7.80 -2.39 -0.02 -1.82 16 4 C -0.54 -28.13 8.59 25.60 0.22 -27.91 16 5 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -52.14 11.32 21.45 0.24 -51.90 16 8 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 9 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 12 N -0.68 -25.47 6.30 -495.44 -3.12 -28.60 16 13 C 0.07 2.02 5.47 86.30 0.47 2.49 16 14 C -0.03 -0.62 6.04 29.85 0.18 -0.44 16 15 C 0.01 0.23 6.56 41.35 0.27 0.50 16 16 C -0.06 -1.36 11.99 83.73 1.00 -0.36 16 17 N -0.30 -8.80 12.41 -58.26 -0.72 -9.52 16 18 N -0.11 -3.07 13.38 37.02 0.50 -2.58 16 19 N -0.38 -7.75 6.98 -47.79 -0.33 -8.08 16 20 H 0.46 6.07 8.96 -219.96 -1.97 4.10 16 21 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.05 2.88 6.07 -2.39 -0.01 2.87 16 23 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 24 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 25 H 0.34 11.81 8.22 -89.69 -0.74 11.07 16 26 H 0.01 0.29 8.06 -2.39 -0.02 0.27 16 27 H 0.06 1.96 7.44 -2.39 -0.02 1.94 16 28 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.21 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -64.32 259.40 0.41 -63.91 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -1.55 Total: 11.77 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 3.37 Total: -19.06 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.44 Total: -100.67 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -64.32 0.41 -63.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330670936.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.528 kcal (2) G-P(sol) polarization free energy of solvation -64.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds