Wall clock time and date at job start Sun Mar 29 2020 21:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00377 * 2 1 4 4 C 1.46901 * 111.00167 * 123.95631 * 2 1 3 5 5 C 1.53003 * 109.46774 * 66.04410 * 4 2 1 6 6 C 1.50707 * 109.46878 * 179.97438 * 5 4 2 7 7 C 1.34952 * 125.48330 * 125.33600 * 6 5 4 8 8 N 1.36661 * 106.72361 * 180.15993 * 7 6 5 9 9 C 1.37571 * 126.88369 * 179.84614 * 8 7 6 10 10 H 1.08002 * 120.00318 * 359.71697 * 9 8 7 11 11 C 1.39014 * 119.99843 * 179.43498 * 9 8 7 12 12 N 1.31254 * 120.00065 * 0.27738 * 11 9 8 13 13 Si 1.86803 * 119.99906 * 180.27880 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00069 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00020 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99819 * 13 11 9 17 17 N 1.40325 * 106.23023 * 359.58856 * 8 7 6 18 18 N 1.28754 * 108.03107 * 0.25843 * 17 8 7 19 19 H 1.08994 * 109.47374 * 296.04636 * 1 2 3 20 20 H 1.09009 * 109.46753 * 56.04648 * 1 2 3 21 21 H 1.08997 * 109.47620 * 176.04090 * 1 2 3 22 22 H 1.08996 * 109.47716 * 183.95240 * 3 2 1 23 23 H 1.09001 * 109.47358 * 303.95964 * 3 2 1 24 24 H 1.09004 * 109.46724 * 63.95256 * 3 2 1 25 25 H 1.08998 * 109.46975 * 306.04871 * 4 2 1 26 26 H 1.08994 * 109.47146 * 186.04102 * 4 2 1 27 27 H 1.08998 * 109.46993 * 60.00472 * 5 4 2 28 28 H 1.08993 * 109.47481 * 300.00051 * 5 4 2 29 29 H 1.07997 * 126.63660 * 0.02675 * 7 6 5 30 30 H 0.97005 * 119.99937 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6314 -2.2427 0.9702 6 6 2.1720 -3.0286 2.1369 7 6 1.4474 -3.8328 2.9428 8 7 2.3132 -4.3466 3.8670 9 6 2.0094 -5.2151 4.8897 10 1 0.9935 -5.5558 5.0250 11 6 3.0110 -5.6587 5.7455 12 7 4.2457 -5.2447 5.5811 13 14 2.5999 -6.8440 7.1295 14 1 2.7402 -8.2402 6.6435 15 1 3.5292 -6.6197 8.2659 16 1 1.2033 -6.6144 7.5793 17 7 3.5753 -3.8155 3.5600 18 7 3.4454 -3.0461 2.5358 19 1 -0.3634 0.4512 0.9232 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3634 -1.0252 -0.0710 22 1 3.0828 1.3432 -0.0708 23 1 1.5898 1.9164 -0.8524 24 1 1.7044 1.8723 0.9233 25 1 1.5611 -0.3873 2.0627 26 1 3.0797 -0.6612 1.1755 27 1 2.0658 -2.6213 0.0450 28 1 0.5472 -2.3476 0.9322 29 1 0.3880 -4.0301 2.8725 30 1 4.9446 -5.5540 6.1785 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330753168.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:52 Heat of formation + Delta-G solvation = 65.933190 kcal Electronic energy + Delta-G solvation = -13476.415812 eV Core-core repulsion = 11114.733100 eV Total energy + Delta-G solvation = -2361.682713 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.03357 -38.50160 -36.07862 -33.62542 -32.98586 -29.42776 -28.42065 -27.50107 -25.17996 -23.32043 -22.09412 -21.37264 -19.25853 -17.46986 -16.58367 -16.42258 -16.01039 -15.77055 -15.44959 -14.98811 -14.30805 -14.07278 -13.67662 -13.26474 -13.17513 -13.08620 -12.72936 -12.52775 -12.37869 -12.08015 -11.89873 -11.67467 -11.49689 -11.03827 -10.64656 -9.32919 -9.26105 -8.69384 -6.62907 1.10854 1.37645 1.57655 1.64734 2.06840 2.18919 2.78093 2.92259 3.10202 4.03525 4.22821 4.29959 4.42433 4.51297 4.54922 4.68071 4.73113 4.80407 4.84709 4.94936 5.01164 5.09901 5.15048 5.19489 5.41169 5.96751 5.97696 6.08554 6.19669 6.60804 7.19331 8.23064 8.32096 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.079180 B = 0.006151 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.538588 B = 4550.973107 C = 4737.142200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.558 5.558 3 C 0.024 3.976 4 C 0.076 3.924 5 C -0.003 4.003 6 C -0.068 4.068 7 C -0.127 4.127 8 N -0.165 5.165 9 C -0.344 4.344 10 H 0.147 0.853 11 C -0.002 4.002 12 N -0.812 5.812 13 Si 1.029 2.971 14 H -0.260 1.260 15 H -0.272 1.272 16 H -0.241 1.241 17 N -0.155 5.155 18 N -0.359 5.359 19 H 0.023 0.977 20 H 0.085 0.915 21 H 0.075 0.925 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.194 0.806 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 4.721 -4.232 11.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.282 5.282 3 C -0.124 4.124 4 C -0.052 4.052 5 C -0.043 4.043 6 C -0.217 4.217 7 C -0.280 4.280 8 N 0.063 4.937 9 C -0.480 4.480 10 H 0.165 0.835 11 C -0.217 4.217 12 N -0.439 5.439 13 Si 0.846 3.154 14 H -0.184 1.184 15 H -0.197 1.197 16 H -0.164 1.164 17 N -0.131 5.131 18 N -0.217 5.217 19 H 0.041 0.959 20 H 0.103 0.897 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.107 0.893 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.211 0.789 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.295 4.611 -4.252 9.621 hybrid contribution -0.997 -0.144 1.194 1.562 sum -8.293 4.467 -3.058 9.903 Atomic orbital electron populations 1.22524 0.86279 1.03150 1.00923 1.62019 1.09261 1.14399 1.42553 1.22424 1.00807 0.88181 1.01010 1.21845 0.99306 0.93469 0.90608 1.19612 1.00334 0.91735 0.92629 1.21551 0.89978 1.06467 1.03726 1.23122 0.98826 1.08215 0.97853 1.47062 1.06744 1.23500 1.16426 1.21009 0.98888 1.22350 1.05779 0.83542 1.27128 0.93809 0.99120 1.01642 1.70313 1.02041 1.36531 1.35013 0.84455 0.79946 0.76429 0.74558 1.18420 1.19663 1.16397 1.82482 1.00526 1.16203 1.13923 1.73943 1.19422 1.18258 1.10115 0.95852 0.89659 0.90596 0.91855 0.89333 0.95921 0.96335 0.92544 0.91224 0.89027 0.78939 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.32 127.69 1.19 1.61 16 2 N -0.56 -15.39 5.02 -948.87 -4.76 -20.15 16 3 C 0.02 0.55 9.57 127.69 1.22 1.77 16 4 C 0.08 2.62 4.92 86.30 0.42 3.05 16 5 C 0.00 -0.12 5.70 29.85 0.17 0.05 16 6 C -0.07 -3.26 6.37 41.56 0.26 -2.99 16 7 C -0.13 -6.07 11.45 83.18 0.95 -5.12 16 8 N -0.17 -9.29 3.78 -190.21 -0.72 -10.01 16 9 C -0.34 -17.89 10.31 83.98 0.87 -17.02 16 10 H 0.15 6.51 7.83 -2.91 -0.02 6.48 16 11 C 0.00 -0.12 5.50 84.97 0.47 0.35 16 12 N -0.81 -45.62 11.89 21.66 0.26 -45.36 16 13 Si 1.03 36.48 29.55 68.60 2.03 38.51 16 14 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 15 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 16 H -0.24 -7.70 7.11 99.48 0.71 -6.99 16 17 N -0.16 -9.66 11.73 37.02 0.43 -9.22 16 18 N -0.36 -20.48 12.29 -48.98 -0.60 -21.08 16 19 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 20 H 0.08 1.48 8.12 -2.38 -0.02 1.46 16 21 H 0.08 1.60 6.47 -2.39 -0.02 1.58 16 22 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 23 H 0.09 1.60 8.12 -2.39 -0.02 1.58 16 24 H 0.02 0.51 8.14 -2.39 -0.02 0.50 16 25 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 26 H 0.06 2.19 8.06 -2.39 -0.02 2.17 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.09 2.73 6.51 -2.39 -0.02 2.71 16 29 H 0.19 7.31 8.06 -2.91 -0.02 7.29 16 30 H 0.29 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -70.15 260.86 3.31 -66.84 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.12 Total: 18.81 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 5.56 Total: -18.32 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -5.39 Total: -105.83 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Total: -70.15 3.31 -66.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330753168.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.774 kcal (2) G-P(sol) polarization free energy of solvation -70.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds