Wall clock time and date at job start Sun Mar 29 2020 22:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00461 * 2 1 4 4 O 1.20830 * 119.99664 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00237 * 179.97438 * 3 2 1 6 6 C 1.50700 * 109.47204 * 179.97438 * 5 3 2 7 7 C 1.34950 * 125.48418 * 124.99635 * 6 5 3 8 8 N 1.36671 * 106.72691 * 179.74349 * 7 6 5 9 9 C 1.37568 * 126.88654 * 180.23204 * 8 7 6 10 10 H 1.07998 * 119.99790 * 0.02562 * 9 8 7 11 11 C 1.39007 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31248 * 120.00424 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99919 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47025 * 89.99871 * 13 11 9 15 15 H 1.48499 * 109.47047 * 210.00232 * 13 11 9 16 16 H 1.48509 * 109.46840 * 330.00135 * 13 11 9 17 17 N 1.40328 * 106.22786 * 0.26242 * 8 7 6 18 18 N 1.28761 * 108.02712 * 0.02562 * 17 8 7 19 19 H 1.09004 * 109.46761 * 300.00218 * 1 2 3 20 20 H 1.09003 * 109.47148 * 59.99709 * 1 2 3 21 21 H 1.09000 * 109.47560 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46816 * 60.00388 * 5 3 2 23 23 H 1.08994 * 109.47407 * 300.00074 * 5 3 2 24 24 H 1.08002 * 126.63939 * 0.02562 * 7 6 5 25 25 H 0.97001 * 120.00330 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 3.9937 2.7199 -0.0002 7 6 4.8198 3.2929 0.9000 8 7 4.9499 4.6038 0.5358 9 6 5.7038 5.5654 1.1677 10 1 6.2735 5.3118 2.0495 11 6 5.7332 6.8633 0.6706 12 7 5.0421 7.1711 -0.4019 13 14 6.7564 8.1693 1.5291 14 1 8.1254 8.1829 0.9538 15 1 6.1248 9.4993 1.3356 16 1 6.8325 7.8637 2.9804 17 7 4.1596 4.7723 -0.6115 18 7 3.6128 3.6400 -0.8885 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 3.9564 0.7804 -0.8892 23 1 3.9557 0.7808 0.8908 24 1 5.2911 2.8083 1.7423 25 1 5.0630 8.0766 -0.7490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331215596.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:51 Heat of formation + Delta-G solvation = -21.943494 kcal Electronic energy + Delta-G solvation = -13428.170210 eV Core-core repulsion = 10829.125121 eV Total energy + Delta-G solvation = -2599.045088 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.13377 -41.14718 -37.41741 -36.05806 -33.55121 -32.98458 -29.45334 -28.03101 -26.95485 -23.37328 -22.55274 -21.31795 -19.42866 -18.48498 -17.49457 -17.45732 -17.18342 -16.03017 -15.75496 -15.07897 -14.63711 -14.35558 -14.24062 -13.73395 -13.24546 -13.13292 -12.91194 -12.85675 -12.09232 -11.74883 -11.71980 -11.56320 -11.44779 -11.10566 -10.64253 -9.35704 -8.68339 -6.62445 1.10979 1.35123 1.37836 1.57949 1.63523 1.73564 2.07616 2.39879 2.80490 2.93894 3.83774 4.23374 4.32086 4.37102 4.39656 4.59493 4.69536 4.73514 4.88110 5.10235 5.17649 5.45777 5.95296 5.97391 6.61319 6.92918 7.20110 8.23149 8.33065 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.085421 B = 0.006765 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.711302 B = 4138.053977 C = 4245.094107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.460 3.540 4 O -0.538 6.538 5 C -0.003 4.003 6 C -0.076 4.076 7 C -0.115 4.115 8 N -0.167 5.167 9 C -0.343 4.343 10 H 0.151 0.849 11 C -0.005 4.005 12 N -0.813 5.813 13 Si 1.030 2.970 14 H -0.258 1.258 15 H -0.275 1.275 16 H -0.240 1.240 17 N -0.156 5.156 18 N -0.343 5.343 19 H 0.055 0.945 20 H 0.050 0.950 21 H 0.140 0.860 22 H 0.130 0.870 23 H 0.155 0.845 24 H 0.205 0.795 25 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.184 -10.305 5.583 11.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.303 3.697 4 O -0.426 6.426 5 C -0.042 4.042 6 C -0.224 4.224 7 C -0.269 4.269 8 N 0.061 4.939 9 C -0.479 4.479 10 H 0.168 0.832 11 C -0.219 4.219 12 N -0.440 5.440 13 Si 0.847 3.153 14 H -0.182 1.182 15 H -0.199 1.199 16 H -0.163 1.163 17 N -0.132 5.132 18 N -0.202 5.202 19 H 0.074 0.926 20 H 0.069 0.931 21 H 0.158 0.842 22 H 0.147 0.853 23 H 0.173 0.827 24 H 0.222 0.778 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.691 -8.854 4.242 9.842 hybrid contribution 0.223 0.311 0.742 0.835 sum -0.468 -8.543 4.984 9.902 Atomic orbital electron populations 1.23484 0.75508 1.05604 1.01840 1.86481 1.24463 1.32407 1.84293 1.24259 0.93006 0.80962 0.71425 1.90711 1.67967 1.38109 1.45816 1.19506 0.85797 0.90577 1.08322 1.20969 1.06113 0.97219 0.98147 1.23127 1.11242 0.85811 1.06674 1.47087 1.23808 1.07057 1.15913 1.21037 1.25535 0.89145 1.12213 0.83176 1.27169 0.97454 1.01256 0.96050 1.70325 1.32741 1.21861 1.19075 0.84443 0.77041 0.74571 0.79239 1.18217 1.19945 1.16299 1.82521 1.13158 1.14382 1.03159 1.73972 1.21405 0.98989 1.25790 0.92644 0.93086 0.84195 0.85258 0.82743 0.77847 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 15 2 O -0.36 -10.24 10.56 -51.38 -0.54 -10.78 15 3 C 0.46 16.78 7.95 71.23 0.57 17.35 15 4 O -0.54 -25.53 15.29 21.95 0.34 -25.19 15 5 C 0.00 -0.10 6.37 29.10 0.19 0.08 15 6 C -0.08 -3.58 5.90 41.56 0.25 -3.33 15 7 C -0.11 -5.34 11.45 83.18 0.95 -4.39 15 8 N -0.17 -9.44 3.78 -190.21 -0.72 -10.16 15 9 C -0.34 -17.84 10.31 83.98 0.87 -16.98 15 10 H 0.15 6.57 7.83 -2.91 -0.02 6.55 15 11 C 0.00 -0.25 5.50 84.96 0.47 0.22 15 12 N -0.81 -46.40 11.89 21.66 0.26 -46.14 15 13 Si 1.03 36.79 29.55 68.60 2.03 38.82 15 14 H -0.26 -8.74 7.11 99.48 0.71 -8.04 15 15 H -0.27 -9.75 7.11 99.48 0.71 -9.05 15 16 H -0.24 -7.70 7.11 99.48 0.71 -6.99 15 17 N -0.16 -9.89 11.73 37.02 0.43 -9.46 15 18 N -0.34 -20.09 11.66 -48.99 -0.57 -20.66 15 19 H 0.05 1.30 8.13 -2.39 -0.02 1.28 15 20 H 0.05 1.25 8.13 -2.39 -0.02 1.23 15 21 H 0.14 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.13 3.57 8.14 -2.38 -0.02 3.55 15 23 H 0.15 3.49 8.10 -2.39 -0.02 3.47 15 24 H 0.20 7.12 8.06 -2.91 -0.02 7.09 15 25 H 0.29 14.82 8.31 -92.71 -0.77 14.05 15 Total: -1.00 -80.67 238.65 6.91 -73.76 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.21 Total: 15.01 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 4.48 Total: -5.20 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -0.60 Total: -86.42 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.21 Total: -35.97 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -80.67 6.91 -73.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331215596.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.816 kcal (2) G-P(sol) polarization free energy of solvation -80.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds