Wall clock time and date at job start Sun Mar 29 2020 21:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28868 * 125.94902 * 2 1 4 4 C 1.30926 * 108.99880 * 179.97438 * 3 2 1 5 5 N 1.32956 * 108.47938 * 359.97438 * 4 3 2 6 6 C 1.32151 * 107.31230 * 359.77210 * 5 4 3 7 7 C 1.47770 * 126.44271 * 180.21629 * 6 5 4 8 8 O 1.21557 * 119.99859 * 180.16886 * 7 6 5 9 9 N 1.34779 * 120.00024 * 0.17122 * 7 6 5 10 10 C 1.46499 * 119.99983 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47229 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99831 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00276 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99774 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00380 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47105 * 59.99814 * 15 13 11 17 17 H 1.48495 * 109.47479 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46979 * 300.00502 * 15 13 11 19 19 H 1.09001 * 109.47060 * 90.03356 * 1 2 3 20 20 H 1.09004 * 109.47073 * 210.02845 * 1 2 3 21 21 H 1.09000 * 109.47212 * 330.02928 * 1 2 3 22 22 H 1.08006 * 125.75777 * 180.02562 * 4 3 2 23 23 H 0.97000 * 120.00154 * 359.97438 * 9 7 6 24 24 H 1.09001 * 109.47516 * 300.00764 * 10 9 7 25 25 H 1.09003 * 109.47182 * 60.00335 * 10 9 7 26 26 H 0.96994 * 119.99680 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2216 1.0432 0.0000 4 6 3.4740 0.6615 0.0006 5 7 3.5095 -0.6675 0.0015 6 6 2.2588 -1.0943 0.0065 7 6 1.8120 -2.5028 0.0138 8 8 0.6247 -2.7638 0.0148 9 7 2.7208 -3.4981 0.0193 10 6 2.2778 -4.8945 0.0271 11 6 3.4801 -5.8030 0.0315 12 1 4.4748 -5.3822 0.0292 13 6 3.3104 -7.1712 0.0385 14 7 2.0991 -7.6836 0.0408 15 14 4.8008 -8.2973 0.0447 16 1 5.6174 -8.0309 1.2561 17 1 4.3518 -9.7127 0.0512 18 1 5.6181 -8.0433 -1.1688 19 1 -0.3633 -0.0006 -1.0277 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3634 0.8902 0.5134 22 1 4.3332 1.3159 0.0011 23 1 3.6681 -3.2899 0.0182 24 1 1.6780 -5.0805 0.9181 25 1 1.6781 -5.0904 -0.8618 26 1 1.9798 -8.6461 0.0461 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333736728.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:03 Heat of formation + Delta-G solvation = 51.476995 kcal Electronic energy + Delta-G solvation = -13265.798828 eV Core-core repulsion = 10767.656152 eV Total energy + Delta-G solvation = -2498.142675 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.28155 -38.78599 -34.84173 -34.01099 -32.45755 -31.57687 -27.94532 -27.14020 -24.09617 -22.61592 -21.64113 -20.02779 -18.07010 -16.67289 -16.58782 -15.80398 -15.28171 -14.70612 -14.35069 -14.18273 -13.30238 -13.18487 -12.85461 -12.03417 -11.99408 -11.92819 -11.04473 -10.89900 -10.38158 -10.31875 -10.21795 -9.64441 -9.47146 -9.42283 -8.80378 -8.06549 -6.20880 -4.27917 1.34577 2.31804 2.64598 3.25962 3.30350 3.32193 3.60730 3.66464 4.30533 4.47822 4.57765 5.11310 5.15805 5.15987 5.27764 5.59021 6.35577 6.39901 6.51177 7.11637 7.18234 7.38346 7.58147 7.88095 8.15543 8.44087 8.60180 8.85873 9.38268 10.89273 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.060554 B = 0.006814 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.289269 B = 4107.929859 C = 4549.772044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.268 5.268 3 N -0.317 5.317 4 C 0.156 3.844 5 N -0.479 5.479 6 C 0.177 3.823 7 C 0.585 3.415 8 O -0.547 6.547 9 N -0.673 5.673 10 C 0.248 3.752 11 C -0.546 4.546 12 H 0.066 0.934 13 C 0.065 3.935 14 N -0.886 5.886 15 Si 0.907 3.093 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 H 0.089 0.911 20 H 0.118 0.882 21 H 0.093 0.907 22 H 0.221 0.779 23 H 0.405 0.595 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 12.961 0.028 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.063 5.063 3 N -0.154 5.154 4 C -0.143 4.143 5 N -0.206 5.206 6 C -0.099 4.099 7 C 0.365 3.635 8 O -0.425 6.425 9 N -0.321 5.321 10 C 0.128 3.872 11 C -0.584 4.584 12 H 0.084 0.916 13 C -0.139 4.139 14 N -0.524 5.524 15 Si 0.733 3.267 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 H 0.107 0.893 20 H 0.137 0.863 21 H 0.112 0.888 22 H 0.237 0.763 23 H 0.240 0.760 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.050 12.956 0.023 12.999 hybrid contribution 1.086 -0.538 -0.030 1.213 sum 0.036 12.418 -0.007 12.418 Atomic orbital electron populations 1.22468 0.71720 1.06324 1.05253 1.47036 1.09331 1.02772 1.47136 1.74135 1.04326 1.14048 1.22936 1.25890 0.94117 0.90768 1.03552 1.71256 1.18657 1.11144 1.19528 1.24714 0.86520 0.92975 1.05740 1.16554 0.86339 0.81270 0.79348 1.90754 1.15879 1.83117 1.52756 1.46343 1.09530 1.07718 1.68480 1.19318 0.96429 0.73106 0.98317 1.21169 0.92432 0.91170 1.53604 0.91569 1.24931 0.96444 0.97978 0.94497 1.69957 1.20917 1.12782 1.48694 0.86424 0.82149 0.79237 0.78846 1.19957 1.21076 1.19963 0.89254 0.86342 0.88800 0.76302 0.76009 0.94796 0.94796 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.87 59.85 0.65 1.62 15 2 N -0.27 -4.13 3.74 -65.62 -0.25 -4.38 15 3 N -0.32 -4.68 12.08 29.28 0.35 -4.33 15 4 C 0.16 2.18 13.03 -91.89 -1.20 0.99 15 5 N -0.48 -8.06 11.09 -12.46 -0.14 -8.20 15 6 C 0.18 3.14 7.83 -155.27 -1.22 1.93 15 7 C 0.58 11.93 7.83 -12.36 -0.10 11.83 15 8 O -0.55 -12.02 14.67 5.32 0.08 -11.94 15 9 N -0.67 -14.54 5.55 -62.45 -0.35 -14.88 15 10 C 0.25 6.39 5.43 -5.20 -0.03 6.37 15 11 C -0.55 -14.60 9.28 -34.44 -0.32 -14.92 15 12 H 0.07 1.68 7.60 -52.49 -0.40 1.28 15 13 C 0.07 1.78 5.46 -17.82 -0.10 1.68 15 14 N -0.89 -25.48 13.29 55.43 0.74 -24.74 15 15 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 15 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 19 H 0.09 0.92 8.14 -51.93 -0.42 0.49 15 20 H 0.12 1.52 6.31 -51.93 -0.33 1.19 15 21 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.22 2.05 8.06 -52.48 -0.42 1.63 15 23 H 0.41 8.11 8.04 -40.82 -0.33 7.79 15 24 H 0.03 0.95 8.14 -51.93 -0.42 0.52 15 25 H 0.03 0.95 8.14 -51.93 -0.42 0.52 15 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 LS Contribution 241.88 15.07 3.65 3.65 Total: -1.00 -30.96 241.88 -5.55 -36.51 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.30 Total: 3.19 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -2.31 Total: 9.49 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.36 Total: -56.52 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.96 -5.55 -36.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333736728.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.985 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds