Wall clock time and date at job start Sun Mar 29 2020 21:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28868 * 125.94902 * 2 1 4 4 C 1.30926 * 108.99880 * 179.97438 * 3 2 1 5 5 N 1.32956 * 108.47938 * 359.97438 * 4 3 2 6 6 C 1.32151 * 107.31230 * 359.77210 * 5 4 3 7 7 C 1.47770 * 126.44271 * 180.21629 * 6 5 4 8 8 O 1.21557 * 119.99859 * 180.16886 * 7 6 5 9 9 N 1.34779 * 120.00024 * 0.17122 * 7 6 5 10 10 C 1.46499 * 119.99983 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47229 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99831 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00276 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99774 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00380 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47105 * 59.99814 * 15 13 11 17 17 H 1.48495 * 109.47479 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46979 * 300.00502 * 15 13 11 19 19 H 1.09001 * 109.47060 * 90.03356 * 1 2 3 20 20 H 1.09004 * 109.47073 * 210.02845 * 1 2 3 21 21 H 1.09000 * 109.47212 * 330.02928 * 1 2 3 22 22 H 1.08006 * 125.75777 * 180.02562 * 4 3 2 23 23 H 0.97000 * 120.00154 * 359.97438 * 9 7 6 24 24 H 1.09001 * 109.47516 * 300.00764 * 10 9 7 25 25 H 1.09003 * 109.47182 * 60.00335 * 10 9 7 26 26 H 0.96994 * 119.99680 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2216 1.0432 0.0000 4 6 3.4740 0.6615 0.0006 5 7 3.5095 -0.6675 0.0015 6 6 2.2588 -1.0943 0.0065 7 6 1.8120 -2.5028 0.0138 8 8 0.6247 -2.7638 0.0148 9 7 2.7208 -3.4981 0.0193 10 6 2.2778 -4.8945 0.0271 11 6 3.4801 -5.8030 0.0315 12 1 4.4748 -5.3822 0.0292 13 6 3.3104 -7.1712 0.0385 14 7 2.0991 -7.6836 0.0408 15 14 4.8008 -8.2973 0.0447 16 1 5.6174 -8.0309 1.2561 17 1 4.3518 -9.7127 0.0512 18 1 5.6181 -8.0433 -1.1688 19 1 -0.3633 -0.0006 -1.0277 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3634 0.8902 0.5134 22 1 4.3332 1.3159 0.0011 23 1 3.6681 -3.2899 0.0182 24 1 1.6780 -5.0805 0.9181 25 1 1.6781 -5.0904 -0.8618 26 1 1.9798 -8.6461 0.0461 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333736728.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:03 Heat of formation + Delta-G solvation = 29.568835 kcal Electronic energy + Delta-G solvation = -13266.748837 eV Core-core repulsion = 10767.656152 eV Total energy + Delta-G solvation = -2499.092684 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.50061 -40.48501 -36.47812 -35.47179 -34.36919 -32.89743 -29.64097 -28.50433 -25.76901 -24.14948 -23.05167 -21.61808 -19.65099 -18.17088 -17.90144 -17.51658 -17.02398 -16.27595 -16.06017 -15.52791 -14.92719 -14.20288 -14.07026 -14.00902 -13.94204 -13.12023 -12.96079 -12.68457 -12.24504 -11.56792 -11.52487 -11.44101 -11.30472 -10.81782 -10.63628 -9.96494 -8.29035 -6.44796 -0.02296 1.11303 1.42744 1.46162 1.49324 1.57495 2.09784 2.17167 2.42656 3.06512 3.11768 3.46744 3.87042 4.24466 4.29022 4.62053 5.02491 5.17003 5.20670 5.28851 5.30067 5.36555 5.58700 5.80766 6.55367 6.63188 6.99970 7.07482 7.28604 8.82562 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.060554 B = 0.006814 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.289269 B = 4107.929859 C = 4549.772044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.261 5.261 3 N -0.313 5.313 4 C 0.161 3.839 5 N -0.490 5.490 6 C 0.152 3.848 7 C 0.590 3.410 8 O -0.568 6.568 9 N -0.675 5.675 10 C 0.266 3.734 11 C -0.561 4.561 12 H 0.080 0.920 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.982 3.018 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.264 1.264 19 H 0.104 0.896 20 H 0.103 0.897 21 H 0.126 0.874 22 H 0.264 0.736 23 H 0.413 0.587 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 14.231 -0.006 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.056 5.056 3 N -0.151 5.151 4 C -0.138 4.138 5 N -0.218 5.218 6 C -0.124 4.124 7 C 0.372 3.628 8 O -0.447 6.447 9 N -0.324 5.324 10 C 0.144 3.856 11 C -0.598 4.598 12 H 0.098 0.902 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.805 3.195 16 H -0.188 1.188 17 H -0.209 1.209 18 H -0.189 1.189 19 H 0.123 0.877 20 H 0.122 0.878 21 H 0.144 0.856 22 H 0.280 0.720 23 H 0.250 0.750 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.442 14.262 -0.011 14.269 hybrid contribution 0.556 -0.792 -0.019 0.968 sum 0.997 13.470 -0.030 13.507 Atomic orbital electron populations 1.22729 0.69954 1.07194 1.06533 1.47339 1.10438 1.02144 1.45728 1.74179 1.04734 1.13494 1.22674 1.26793 0.95095 0.90107 1.01776 1.71231 1.18257 1.12756 1.19569 1.23998 0.87589 0.91986 1.08804 1.16770 0.85751 0.82349 0.77977 1.90736 1.16779 1.83964 1.53194 1.46043 1.10175 1.06517 1.69629 1.18796 0.95791 0.75532 0.95465 1.21537 0.93086 0.91742 1.53462 0.90172 1.25951 0.99590 0.99709 0.93706 1.70096 1.23438 1.13303 1.49617 0.85244 0.78121 0.76688 0.79424 1.18848 1.20878 1.18869 0.87747 0.87836 0.85568 0.72045 0.75020 0.97808 0.97833 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.64 10.87 127.77 1.39 3.03 15 2 N -0.26 -7.59 3.74 -361.51 -1.35 -8.94 15 3 N -0.31 -8.38 12.08 -61.29 -0.74 -9.12 15 4 C 0.16 4.01 13.03 180.79 2.36 6.37 15 5 N -0.49 -15.65 11.09 -193.33 -2.14 -17.80 15 6 C 0.15 5.26 7.83 136.70 1.07 6.33 15 7 C 0.59 24.41 7.83 86.76 0.68 25.09 15 8 O -0.57 -25.66 14.67 -3.90 -0.06 -25.72 15 9 N -0.68 -29.74 5.55 -469.78 -2.61 -32.34 15 10 C 0.27 14.20 5.43 85.63 0.46 14.67 15 11 C -0.56 -30.25 9.28 25.60 0.24 -30.02 15 12 H 0.08 4.00 7.60 -2.91 -0.02 3.98 15 13 C 0.01 0.58 5.46 84.65 0.46 1.05 15 14 N -0.93 -54.27 13.29 21.45 0.28 -53.98 15 15 Si 0.98 41.95 29.54 68.60 2.03 43.98 15 16 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 17 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 18 H -0.26 -10.79 7.11 99.48 0.71 -10.08 15 19 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 20 H 0.10 2.62 6.31 -2.38 -0.02 2.60 15 21 H 0.13 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.26 3.78 8.06 -2.91 -0.02 3.75 15 23 H 0.41 16.61 8.04 -92.71 -0.75 15.87 15 24 H 0.00 0.23 8.14 -2.39 -0.02 0.21 15 25 H 0.00 0.22 8.14 -2.39 -0.02 0.20 15 26 H 0.27 14.81 8.31 -92.71 -0.77 14.04 15 Total: -1.00 -66.81 241.88 2.54 -64.28 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.47 Total: 13.13 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 6.66 Total: 26.51 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -6.56 Total: -122.18 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.06 Total: -25.72 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -66.81 2.54 -64.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333736728.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.847 kcal (2) G-P(sol) polarization free energy of solvation -66.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds