Wall clock time and date at job start Sun Mar 29 2020 21:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46952 * 2 1 4 4 N 1.40422 * 126.82640 * 275.33833 * 3 2 1 5 5 C 1.30588 * 106.99540 * 180.02562 * 4 3 2 6 6 N 1.33365 * 109.11365 * 359.77268 * 5 4 3 7 7 C 1.31583 * 109.69334 * 0.38161 * 6 5 4 8 8 N 1.38329 * 126.07816 * 179.89329 * 7 6 5 9 9 C 1.46907 * 110.99570 * 292.10651 * 8 7 6 10 10 C 1.46901 * 111.00087 * 56.05545 * 8 7 6 11 11 C 1.50702 * 109.47286 * 170.00226 * 10 8 7 12 12 H 1.08002 * 119.99544 * 0.02562 * 11 10 8 13 13 C 1.37870 * 120.00174 * 180.02562 * 11 10 8 14 14 N 1.31512 * 119.99919 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00059 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46952 * 90.00183 * 15 13 11 17 17 H 1.48503 * 109.47235 * 210.00191 * 15 13 11 18 18 H 1.48493 * 109.47032 * 330.00310 * 15 13 11 19 19 H 1.08995 * 109.47272 * 299.99873 * 1 2 3 20 20 H 1.08997 * 109.47483 * 60.00153 * 1 2 3 21 21 H 1.09004 * 109.47112 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46840 * 240.00507 * 2 1 3 23 23 H 1.08997 * 109.47483 * 119.99847 * 2 1 3 24 24 H 1.07999 * 125.44391 * 180.02562 * 5 4 3 25 25 H 1.08998 * 109.46760 * 189.66854 * 9 8 7 26 26 H 1.09001 * 109.47268 * 309.67632 * 9 8 7 27 27 H 1.09002 * 109.46606 * 69.67601 * 9 8 7 28 28 H 1.09001 * 109.46477 * 50.00785 * 10 8 7 29 29 H 1.08995 * 109.47030 * 290.00627 * 10 8 7 30 30 H 0.97005 * 119.99737 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2002 2.2097 -1.1191 5 6 2.6491 3.3539 -0.6781 6 7 2.7561 3.2984 0.6501 7 6 2.3833 2.1104 1.0757 8 7 2.3631 1.6861 2.3921 9 6 3.7258 1.5693 2.9285 10 6 1.5460 2.5819 3.2215 11 6 1.3444 1.9632 4.5809 12 1 1.7801 1.0010 4.8062 13 6 0.6037 2.6255 5.5367 14 7 0.0727 3.7969 5.2621 15 14 0.3545 1.8590 7.2219 16 1 1.4489 2.2898 8.1284 17 1 -0.9506 2.2986 7.7776 18 1 0.3670 0.3791 7.0993 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 2.8907 4.2100 -1.2906 25 1 3.6930 1.0743 3.8990 26 1 4.3374 0.9836 2.2422 27 1 4.1579 2.5636 3.0421 28 1 0.5777 2.7354 2.7451 29 1 2.0536 3.5402 3.3301 30 1 -0.4487 4.2627 5.9345 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337749768.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:09 Heat of formation + Delta-G solvation = 78.534329 kcal Electronic energy + Delta-G solvation = -14002.365374 eV Core-core repulsion = 11641.229087 eV Total energy + Delta-G solvation = -2361.136286 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.05803 -38.30840 -35.88385 -34.72519 -31.67623 -30.92314 -29.33700 -27.10236 -25.01743 -24.21438 -22.54926 -21.09183 -18.78499 -17.88889 -17.25669 -16.66487 -16.40417 -15.82073 -15.18775 -15.01569 -14.85903 -14.07243 -13.85656 -13.52034 -13.16418 -12.99528 -12.89795 -12.68586 -12.46211 -12.10886 -12.06109 -11.44879 -11.06600 -10.74212 -10.66332 -10.43598 -9.74516 -8.22444 -6.35135 0.53336 1.23903 1.45748 1.47037 1.58663 1.91093 2.40543 2.91551 3.12082 3.64491 3.66527 4.09987 4.17668 4.33641 4.37091 4.61785 4.73374 4.82380 4.89197 5.04773 5.11022 5.18690 5.32879 5.39288 5.55683 5.69068 5.87444 5.96065 6.49290 6.78450 7.13347 7.35046 8.89537 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.039074 B = 0.008828 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.419402 B = 3170.886984 C = 3384.543156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 N -0.364 5.364 4 N -0.335 5.335 5 C 0.196 3.804 6 N -0.600 5.600 7 C 0.441 3.559 8 N -0.474 5.474 9 C 0.054 3.946 10 C 0.234 3.766 11 C -0.526 4.526 12 H 0.079 0.921 13 C 0.003 3.997 14 N -0.935 5.935 15 Si 0.977 3.023 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.257 1.257 19 H 0.034 0.966 20 H 0.054 0.946 21 H 0.110 0.890 22 H 0.116 0.884 23 H 0.109 0.891 24 H 0.250 0.750 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.023 0.977 28 H -0.009 1.009 29 H -0.022 1.022 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.900 -8.024 -8.074 12.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.003 3.997 3 N -0.156 5.156 4 N -0.164 5.164 5 C -0.107 4.107 6 N -0.332 5.332 7 C 0.076 3.924 8 N -0.200 5.200 9 C -0.093 4.093 10 C 0.108 3.892 11 C -0.564 4.564 12 H 0.097 0.903 13 C -0.196 4.196 14 N -0.574 5.574 15 Si 0.801 3.199 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.181 1.181 19 H 0.053 0.947 20 H 0.073 0.927 21 H 0.128 0.872 22 H 0.135 0.865 23 H 0.127 0.873 24 H 0.265 0.735 25 H 0.110 0.890 26 H 0.094 0.906 27 H 0.041 0.959 28 H 0.009 0.991 29 H -0.004 1.004 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.528 -8.361 -8.549 12.468 hybrid contribution -0.146 0.933 0.909 1.311 sum 3.382 -7.428 -7.640 11.180 Atomic orbital electron populations 1.22065 0.93718 1.04494 1.01327 1.22051 0.95902 0.75857 1.05848 1.50679 1.47909 1.13847 1.03195 1.77840 1.26070 1.04284 1.08209 1.26460 0.96825 0.97342 0.90081 1.71071 1.28480 1.20378 1.13282 1.22317 0.93699 0.86406 0.90011 1.59324 1.15245 1.49847 0.95548 1.22246 0.85246 1.00500 1.01308 1.19305 0.89655 0.88968 0.91255 1.21381 1.33085 1.05665 0.96267 0.90294 1.25989 0.94935 0.95192 1.03475 1.70130 1.35237 1.15716 1.36349 0.85261 0.77422 0.79172 0.78032 1.19681 1.21170 1.18114 0.94661 0.92657 0.87154 0.86541 0.87253 0.73463 0.88983 0.90649 0.95869 0.99094 1.00445 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 10.24 71.98 0.74 -3.35 16 2 C 0.12 3.31 7.18 86.38 0.62 3.93 16 3 N -0.36 -13.04 3.65 -349.85 -1.28 -14.32 16 4 N -0.33 -11.71 12.68 -61.24 -0.78 -12.48 16 5 C 0.20 6.78 13.02 180.76 2.35 9.13 16 6 N -0.60 -25.61 11.12 -202.02 -2.25 -27.86 16 7 C 0.44 18.54 6.31 260.78 1.64 20.19 16 8 N -0.47 -20.82 4.62 -736.64 -3.41 -24.23 16 9 C 0.05 2.05 9.26 127.69 1.18 3.24 16 10 C 0.23 12.68 4.57 85.56 0.39 13.07 16 11 C -0.53 -28.69 8.59 25.60 0.22 -28.47 16 12 H 0.08 4.03 7.10 -2.91 -0.02 4.01 16 13 C 0.00 0.15 5.46 84.65 0.46 0.61 16 14 N -0.93 -56.18 13.29 21.44 0.28 -55.90 16 15 Si 0.98 42.66 29.54 68.60 2.03 44.69 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 17 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 19 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 20 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 22 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 23 H 0.11 2.81 8.03 -2.39 -0.02 2.79 16 24 H 0.25 6.02 8.06 -2.91 -0.02 6.00 16 25 H 0.09 3.36 7.03 -2.39 -0.02 3.34 16 26 H 0.07 2.38 8.06 -2.39 -0.02 2.36 16 27 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 28 H -0.01 -0.55 8.05 -2.39 -0.02 -0.57 16 29 H -0.02 -1.36 8.06 -2.39 -0.02 -1.38 16 30 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -68.68 264.17 3.33 -65.35 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.12 Total: 6.40 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 7.61 Total: 18.35 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -7.42 Total: -134.79 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -68.68 3.33 -65.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337749768.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.884 kcal (2) G-P(sol) polarization free energy of solvation -68.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds