Wall clock time and date at job start Sun Mar 29 2020 22:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47177 * 114.00767 * 3 2 1 5 5 C 1.37092 * 119.99775 * 263.83824 * 4 3 2 6 6 H 1.08002 * 120.00340 * 199.82931 * 5 4 3 7 7 C 1.38954 * 120.00405 * 19.83449 * 5 4 3 8 8 N 1.31412 * 119.99831 * 21.70474 * 7 5 4 9 9 Si 1.86796 * 120.00204 * 201.71296 * 7 5 4 10 10 H 1.48503 * 109.47069 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47155 * 119.99440 * 9 7 5 12 12 H 1.48505 * 109.46966 * 239.99731 * 9 7 5 13 13 C 1.34774 * 119.99838 * 83.83636 * 4 3 2 14 14 O 1.21297 * 119.99633 * 179.72272 * 13 4 3 15 15 C 1.50701 * 120.00336 * 0.02562 * 13 4 3 16 16 H 1.09004 * 115.54735 * 34.33515 * 15 13 4 17 17 C 1.52991 * 117.50028 * 248.61873 * 15 13 4 18 18 C 1.52998 * 60.00310 * 252.50804 * 17 15 13 19 19 H 1.09001 * 117.49384 * 107.48695 * 18 17 15 20 20 F 1.39892 * 117.50316 * 252.51123 * 18 17 15 21 21 H 4.40641 * 5.51526 * 179.97438 * 4 1 2 22 22 H 1.08994 * 109.47257 * 354.00217 * 3 2 1 23 23 H 1.09005 * 109.46695 * 234.00612 * 3 2 1 24 24 H 0.96993 * 120.00368 * 180.02562 * 8 7 5 25 25 H 1.08998 * 117.50045 * 0.02562 * 17 15 13 26 26 H 1.09009 * 117.49652 * 145.02208 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5628 -1.2618 5 6 3.4831 -0.2697 -2.2935 6 1 4.1272 0.0891 -3.0828 7 6 3.0082 -1.5752 -2.3240 8 7 1.9269 -1.8969 -1.6501 9 14 3.9068 -2.8729 -3.3229 10 1 5.0860 -2.2593 -3.9848 11 1 4.3563 -3.9660 -2.4240 12 1 2.9921 -3.4248 -4.3544 13 6 3.2400 1.8984 -1.4081 14 8 3.6489 2.3637 -2.4510 15 6 2.8568 2.8136 -0.2737 16 1 3.0645 2.4343 0.7269 17 6 1.6100 3.6812 -0.4563 18 6 2.9997 4.3197 -0.5019 19 1 3.3707 4.6487 -1.4726 20 9 3.3861 5.1046 0.5896 21 1 -1.0501 -0.0002 0.0000 22 1 3.0098 -1.0211 0.1074 23 1 3.0090 0.6048 0.8315 24 1 1.5955 -2.8082 -1.6710 25 1 1.0666 3.5899 -1.3967 26 1 0.9969 3.8728 0.4244 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338917484.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:51 Heat of formation + Delta-G solvation = 10.811558 kcal Electronic energy + Delta-G solvation = -13739.960847 eV Core-core repulsion = 11122.416162 eV Total energy + Delta-G solvation = -2617.544684 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.32233 -38.92001 -35.74810 -34.63775 -32.09361 -31.24255 -26.63583 -25.38260 -22.88359 -21.98812 -18.93967 -17.89744 -17.17113 -16.55585 -15.39480 -15.25431 -14.43119 -14.36503 -14.12616 -13.78727 -12.82030 -12.70077 -12.33094 -11.91866 -11.66247 -11.64118 -11.06980 -10.54297 -10.39416 -10.04805 -9.71520 -9.38542 -9.29976 -8.94081 -8.51859 -7.91834 -6.39239 -3.93232 3.07743 3.22806 3.29168 3.43005 3.70277 4.02306 4.12727 4.17515 4.38530 4.89791 4.98736 5.11471 5.35958 5.42546 5.48979 5.69756 5.95084 6.22801 6.31996 6.46024 6.66883 6.99593 7.50711 7.98982 8.35208 8.80644 9.05655 9.28028 9.83103 10.61201 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.040345 B = 0.010277 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.848771 B = 2723.915064 C = 3208.021160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.112 4.112 3 C 0.232 3.768 4 N -0.430 5.430 5 C -0.318 4.318 6 H 0.105 0.895 7 C 0.033 3.967 8 N -0.857 5.857 9 Si 0.921 3.079 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.478 3.522 14 O -0.583 6.583 15 C -0.182 4.182 16 H 0.120 0.880 17 C -0.162 4.162 18 C 0.035 3.965 19 H 0.143 0.857 20 F -0.190 7.190 21 H 0.199 0.801 22 H 0.106 0.894 23 H 0.064 0.936 24 H 0.269 0.731 25 H 0.111 0.889 26 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 3.817 5.149 6.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.114 4.114 3 C 0.109 3.891 4 N -0.147 5.147 5 C -0.445 4.445 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.494 5.494 9 Si 0.748 3.252 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.266 3.734 14 O -0.468 6.468 15 C -0.203 4.203 16 H 0.138 0.862 17 C -0.200 4.200 18 C -0.001 4.001 19 H 0.160 0.840 20 F -0.170 7.170 21 H 0.216 0.784 22 H 0.124 0.876 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.129 0.871 26 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.939 3.849 4.681 6.133 hybrid contribution -0.090 -0.924 -0.235 0.958 sum -1.029 2.925 4.446 5.420 Atomic orbital electron populations 1.24232 0.95320 1.05015 1.03092 1.23061 0.94242 0.96548 0.97550 1.18242 0.84518 1.00578 0.85802 1.43602 1.55181 1.03657 1.12266 1.19715 1.28352 0.91820 1.04663 0.87705 1.25338 0.94945 0.98927 0.97990 1.70101 1.17796 1.19820 1.41717 0.85949 0.79779 0.80211 0.79295 1.19111 1.20530 1.20822 1.18953 0.84546 0.82492 0.87407 1.90522 1.51510 1.75140 1.29643 1.22923 1.03596 0.92502 1.01321 0.86169 1.23526 0.90716 1.00985 1.04755 1.22118 1.00452 0.89156 0.88397 0.84001 1.92755 1.92001 1.75388 1.56906 0.78420 0.87577 0.91811 0.92084 0.87103 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.24 19.25 29.55 0.57 -4.67 15 2 C -0.11 -2.48 11.28 -37.12 -0.42 -2.89 15 3 C 0.23 5.06 4.91 -6.83 -0.03 5.02 15 4 N -0.43 -10.75 2.60 -117.93 -0.31 -11.06 15 5 C -0.32 -8.64 9.28 -14.93 -0.14 -8.78 15 6 H 0.11 3.00 7.42 -52.49 -0.39 2.61 15 7 C 0.03 0.85 4.83 -17.47 -0.08 0.76 15 8 N -0.86 -22.19 9.59 55.50 0.53 -21.66 15 9 Si 0.92 20.09 29.60 -169.99 -5.03 15.06 15 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 13 C 0.48 11.52 7.34 -10.99 -0.08 11.44 15 14 O -0.58 -15.87 15.93 5.54 0.09 -15.78 15 15 C -0.18 -3.44 5.15 -91.77 -0.47 -3.91 15 16 H 0.12 2.06 6.53 -51.93 -0.34 1.72 15 17 C -0.16 -2.65 10.22 -26.74 -0.27 -2.92 15 18 C 0.04 0.60 7.41 -26.73 -0.20 0.40 15 19 H 0.14 2.45 7.67 -51.93 -0.40 2.05 15 20 F -0.19 -3.19 17.60 2.25 0.04 -3.15 15 21 H 0.20 3.28 7.80 -54.09 -0.42 2.85 15 22 H 0.11 2.42 6.60 -51.93 -0.34 2.07 15 23 H 0.06 1.16 6.28 -51.93 -0.33 0.84 15 24 H 0.27 6.63 8.31 -40.82 -0.34 6.29 15 25 H 0.11 1.87 8.14 -51.93 -0.42 1.45 15 26 H 0.11 1.48 8.14 -51.92 -0.42 1.06 15 LS Contribution 243.21 15.07 3.67 3.67 Total: -1.00 -29.98 243.21 -4.34 -34.32 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -2.20 Total: 4.16 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.13 Total: -5.56 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.23 Total: -32.72 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.09 Total: -15.78 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.98 -4.34 -34.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338917484.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.136 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds