Wall clock time and date at job start Sun Mar 29 2020 22:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47177 * 114.00767 * 3 2 1 5 5 C 1.37092 * 119.99775 * 263.83824 * 4 3 2 6 6 H 1.08002 * 120.00340 * 199.82931 * 5 4 3 7 7 C 1.38954 * 120.00405 * 19.83449 * 5 4 3 8 8 N 1.31412 * 119.99831 * 21.70474 * 7 5 4 9 9 Si 1.86796 * 120.00204 * 201.71296 * 7 5 4 10 10 H 1.48503 * 109.47069 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47155 * 119.99440 * 9 7 5 12 12 H 1.48505 * 109.46966 * 239.99731 * 9 7 5 13 13 C 1.34774 * 119.99838 * 83.83636 * 4 3 2 14 14 O 1.21297 * 119.99633 * 179.72272 * 13 4 3 15 15 C 1.50701 * 120.00336 * 0.02562 * 13 4 3 16 16 H 1.09004 * 115.54735 * 34.33515 * 15 13 4 17 17 C 1.52991 * 117.50028 * 248.61873 * 15 13 4 18 18 C 1.52998 * 60.00310 * 252.50804 * 17 15 13 19 19 H 1.09001 * 117.49384 * 107.48695 * 18 17 15 20 20 F 1.39892 * 117.50316 * 252.51123 * 18 17 15 21 21 H 4.40641 * 5.51526 * 179.97438 * 4 1 2 22 22 H 1.08994 * 109.47257 * 354.00217 * 3 2 1 23 23 H 1.09005 * 109.46695 * 234.00612 * 3 2 1 24 24 H 0.96993 * 120.00368 * 180.02562 * 8 7 5 25 25 H 1.08998 * 117.50045 * 0.02562 * 17 15 13 26 26 H 1.09009 * 117.49652 * 145.02208 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5628 -1.2618 5 6 3.4831 -0.2697 -2.2935 6 1 4.1272 0.0891 -3.0828 7 6 3.0082 -1.5752 -2.3240 8 7 1.9269 -1.8969 -1.6501 9 14 3.9068 -2.8729 -3.3229 10 1 5.0860 -2.2593 -3.9848 11 1 4.3563 -3.9660 -2.4240 12 1 2.9921 -3.4248 -4.3544 13 6 3.2400 1.8984 -1.4081 14 8 3.6489 2.3637 -2.4510 15 6 2.8568 2.8136 -0.2737 16 1 3.0645 2.4343 0.7269 17 6 1.6100 3.6812 -0.4563 18 6 2.9997 4.3197 -0.5019 19 1 3.3707 4.6487 -1.4726 20 9 3.3861 5.1046 0.5896 21 1 -1.0501 -0.0002 0.0000 22 1 3.0098 -1.0211 0.1074 23 1 3.0090 0.6048 0.8315 24 1 1.5955 -2.8082 -1.6710 25 1 1.0666 3.5899 -1.3967 26 1 0.9969 3.8728 0.4244 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338917484.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:51 Heat of formation + Delta-G solvation = -6.897818 kcal Electronic energy + Delta-G solvation = -13740.728783 eV Core-core repulsion = 11122.416162 eV Total energy + Delta-G solvation = -2618.312621 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.67323 -40.71360 -37.45348 -36.33107 -33.95870 -33.01745 -28.43711 -27.17824 -24.56908 -23.34099 -20.63310 -19.68370 -18.78272 -18.29839 -17.13685 -16.74509 -16.16375 -15.97554 -15.74271 -15.42091 -14.47811 -14.35956 -14.02732 -13.57642 -13.34776 -13.17683 -12.81179 -12.50276 -12.14711 -11.50922 -11.21010 -11.10257 -11.04973 -10.64791 -10.36671 -9.84928 -8.34600 -5.97030 1.32830 1.43229 1.56160 1.73970 2.04216 2.33354 2.42049 2.64558 2.84558 3.04188 3.35804 3.65727 3.83214 3.95295 4.04152 4.14280 4.65364 4.67819 4.86102 4.95143 5.12891 5.44268 5.45555 6.03175 6.40259 7.10042 7.18711 7.37164 7.93351 8.63754 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.040345 B = 0.010277 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.848771 B = 2723.915064 C = 3208.021160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.153 4.153 3 C 0.233 3.767 4 N -0.442 5.442 5 C -0.357 4.357 6 H 0.076 0.924 7 C 0.006 3.994 8 N -0.867 5.867 9 Si 0.984 3.016 10 H -0.274 1.274 11 H -0.264 1.264 12 H -0.280 1.280 13 C 0.468 3.532 14 O -0.628 6.628 15 C -0.196 4.196 16 H 0.141 0.859 17 C -0.139 4.139 18 C 0.045 3.955 19 H 0.136 0.864 20 F -0.185 7.185 21 H 0.233 0.767 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.273 0.727 25 H 0.104 0.896 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 3.658 6.235 7.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.155 4.155 3 C 0.111 3.889 4 N -0.158 5.158 5 C -0.484 4.484 6 H 0.094 0.906 7 C -0.198 4.198 8 N -0.503 5.503 9 Si 0.808 3.192 10 H -0.199 1.199 11 H -0.189 1.189 12 H -0.205 1.205 13 C 0.258 3.742 14 O -0.516 6.516 15 C -0.217 4.217 16 H 0.159 0.841 17 C -0.177 4.177 18 C 0.009 3.991 19 H 0.154 0.846 20 F -0.165 7.165 21 H 0.249 0.751 22 H 0.108 0.892 23 H 0.115 0.885 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.991 3.682 5.806 7.157 hybrid contribution 0.184 -0.858 -0.569 1.046 sum -1.807 2.825 5.236 6.218 Atomic orbital electron populations 1.25089 0.96256 1.03255 1.01264 1.23280 0.94792 0.98188 0.99213 1.18297 0.85009 1.00184 0.85405 1.43795 1.55181 1.04040 1.12806 1.19611 1.29756 0.93398 1.05643 0.90641 1.26005 0.95223 0.99786 0.98819 1.70177 1.17968 1.20300 1.41872 0.85026 0.78283 0.77808 0.78068 1.19865 1.18911 1.20545 1.19771 0.83360 0.82814 0.88288 1.90479 1.53287 1.75957 1.31902 1.22819 1.06310 0.92520 1.00068 0.84119 1.23639 0.90122 0.98098 1.05838 1.21980 1.01115 0.87814 0.88231 0.84617 1.92771 1.92060 1.75052 1.56639 0.75083 0.89235 0.88467 0.91677 0.87761 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.15 19.25 74.32 1.43 -7.72 15 2 C -0.15 -6.52 11.28 31.12 0.35 -6.17 15 3 C 0.23 10.05 4.91 84.57 0.42 10.47 15 4 N -0.44 -22.38 2.60 -645.41 -1.68 -24.06 15 5 C -0.36 -19.91 9.28 84.04 0.78 -19.13 15 6 H 0.08 4.55 7.42 -2.91 -0.02 4.52 15 7 C 0.01 0.31 4.83 84.93 0.41 0.72 15 8 N -0.87 -44.42 9.59 21.66 0.21 -44.21 15 9 Si 0.98 41.33 29.60 68.60 2.03 43.36 15 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 11 H -0.26 -10.41 7.11 99.48 0.71 -9.70 15 12 H -0.28 -11.59 7.11 99.48 0.71 -10.89 15 13 C 0.47 22.80 7.34 87.66 0.64 23.45 15 14 O -0.63 -35.29 15.93 -3.08 -0.05 -35.34 15 15 C -0.20 -7.13 5.15 -11.54 -0.06 -7.19 15 16 H 0.14 4.48 6.53 -2.39 -0.02 4.47 15 17 C -0.14 -4.20 10.22 30.59 0.31 -3.89 15 18 C 0.05 1.46 7.41 30.59 0.23 1.69 15 19 H 0.14 4.62 7.67 -2.39 -0.02 4.61 15 20 F -0.18 -5.76 17.60 44.97 0.79 -4.97 15 21 H 0.23 6.78 7.80 -4.41 -0.03 6.74 15 22 H 0.09 4.09 6.60 -2.39 -0.02 4.08 15 23 H 0.10 3.41 6.28 -2.38 -0.01 3.39 15 24 H 0.27 13.18 8.31 -92.71 -0.77 12.41 15 25 H 0.10 3.33 8.14 -2.39 -0.02 3.31 15 26 H 0.14 3.29 8.14 -2.38 -0.02 3.27 15 Total: -1.00 -64.78 243.21 7.01 -57.78 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.19 Total: 15.20 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 4.51 Total: -7.77 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -1.47 Total: -68.26 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.05 Total: -35.34 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.79 Total: -4.97 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -64.78 7.01 -57.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338917484.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.878 kcal (2) G-P(sol) polarization free energy of solvation -64.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds