Wall clock time and date at job start Sun Mar 29 2020 22:00:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47205 * 179.97438 * 2 1
4 4 N 1.46498 * 109.46864 * 203.00258 * 3 2 1
5 5 C 1.37093 * 120.00328 * 96.21067 * 4 3 2
6 6 H 1.07999 * 120.00457 * 216.48429 * 5 4 3
7 7 C 1.38950 * 119.99818 * 36.47745 * 5 4 3
8 8 N 1.31412 * 119.99898 * 203.27047 * 7 5 4
9 9 Si 1.86800 * 120.00000 * 23.26937 * 7 5 4
10 10 H 1.48496 * 109.47162 * 264.33126 * 9 7 5
11 11 H 1.48499 * 109.47273 * 24.33686 * 9 7 5
12 12 H 1.48509 * 109.46782 * 144.33482 * 9 7 5
13 13 C 1.34779 * 120.00128 * 276.20344 * 4 3 2
14 14 O 1.21290 * 120.00077 * 180.02562 * 13 4 3
15 15 C 1.50706 * 119.99925 * 0.02562 * 13 4 3
16 16 H 1.08999 * 115.55077 * 325.67380 * 15 13 4
17 17 C 1.53007 * 117.49575 * 111.37394 * 15 13 4
18 18 C 1.52992 * 117.49845 * 179.97438 * 15 13 4
19 19 H 1.09006 * 117.49681 * 145.02569 * 18 15 13
20 20 F 1.39901 * 117.49988 * 0.02562 * 18 15 13
21 21 H 4.40636 * 5.51440 * 180.02562 * 4 1 2
22 22 H 1.08998 * 109.46730 * 83.00413 * 3 2 1
23 23 H 1.08995 * 109.47265 * 323.00481 * 3 2 1
24 24 H 0.97007 * 120.00142 * 180.02562 * 8 7 5
25 25 H 1.08999 * 117.49655 * 214.98081 * 17 15 13
26 26 H 1.09001 * 117.49672 * 0.02562 * 17 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.2723 0.5397
5 6 3.4833 1.3668 1.8620
6 1 3.2780 2.2736 2.4114
7 6 4.1015 0.2956 2.4954
8 7 4.0308 0.1752 3.8021
9 14 5.0331 -0.9731 1.4895
10 1 4.1454 -2.1293 1.2064
11 1 5.4748 -0.3630 0.2097
12 1 6.2200 -1.4356 2.2530
13 6 3.2389 2.3493 -0.2636
14 8 3.6432 3.4020 0.1831
15 6 2.8543 2.2457 -1.7171
16 1 3.0612 1.2861 -2.1909
17 6 1.6069 3.0050 -2.1736
18 6 2.9958 3.5034 -2.5767
19 1 3.2957 3.3713 -3.6163
20 9 3.4727 4.6615 -1.9534
21 1 -1.0502 -0.0004 0.0000
22 1 3.0093 -0.1243 -1.0200
23 1 3.0097 -0.8199 0.6184
24 1 4.4627 -0.5724 4.2443
25 1 0.9929 2.5450 -2.9479
26 1 1.0648 3.5799 -1.4228
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001338917485.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:00:53
Heat of formation + Delta-G solvation = -4.227159 kcal
Electronic energy + Delta-G solvation = -13863.977619 eV
Core-core repulsion = 11245.780807 eV
Total energy + Delta-G solvation = -2618.196812 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 211.075 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-48.44509 -40.79443 -37.44300 -36.50672 -34.51452 -33.30300 -28.56082 -27.67171
-24.46674 -23.26194 -20.51049 -20.11129 -18.77323 -18.33387 -17.61052 -16.72295
-16.48480 -15.92643 -15.51379 -15.03650 -14.91415 -14.49520 -14.44495 -13.96423
-13.70151 -13.08910 -12.85980 -12.64859 -12.02814 -11.42015 -11.31477 -11.19631
-11.05783 -10.89090 -10.42137 -9.92952 -8.57361 -6.20524 1.15396 1.28076
1.42710 1.63697 1.77697 1.96452 2.14349 2.61084 2.78628 2.94295
3.25681 3.57011 3.73074 3.77895 4.05651 4.14444 4.28942 4.47880
4.74750 4.86286 5.11813 5.16787 5.46419 5.96103 6.45673 6.75615
6.86001 7.19098 7.78112 8.60271
Molecular weight = 211.07amu
Principal moments of inertia in cm(-1)
A = 0.031995 B = 0.012399 C = 0.010618
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 874.916234 B = 2257.624632 C = 2636.431446
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.232 4.232
3 C 0.191 3.809
4 N -0.469 5.469
5 C -0.342 4.342
6 H 0.038 0.962
7 C 0.011 3.989
8 N -0.907 5.907
9 Si 0.943 3.057
10 H -0.235 1.235
11 H -0.248 1.248
12 H -0.282 1.282
13 C 0.482 3.518
14 O -0.604 6.604
15 C -0.215 4.215
16 H 0.167 0.833
17 C -0.146 4.146
18 C 0.040 3.960
19 H 0.191 0.809
20 F -0.201 7.201
21 H 0.255 0.745
22 H 0.129 0.871
23 H 0.084 0.916
24 H 0.282 0.718
25 H 0.166 0.834
26 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.421 -4.714 -16.311 17.823
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.233 4.233
3 C 0.070 3.930
4 N -0.190 5.190
5 C -0.470 4.470
6 H 0.056 0.944
7 C -0.191 4.191
8 N -0.543 5.543
9 Si 0.764 3.236
10 H -0.159 1.159
11 H -0.171 1.171
12 H -0.208 1.208
13 C 0.272 3.728
14 O -0.488 6.488
15 C -0.237 4.237
16 H 0.185 0.815
17 C -0.183 4.183
18 C 0.004 3.996
19 H 0.208 0.792
20 F -0.182 7.182
21 H 0.271 0.729
22 H 0.147 0.853
23 H 0.102 0.898
24 H 0.092 0.908
25 H 0.184 0.816
26 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -5.130 -4.248 -15.853 17.195
hybrid contribution 0.437 -0.108 0.974 1.073
sum -4.693 -4.356 -14.879 16.198
Atomic orbital electron populations
1.25681 0.96477 0.97784 0.99509 1.23727 0.95222 1.02651 1.01740
1.19010 0.85471 0.87317 1.01200 1.43718 1.57255 1.09765 1.08246
1.18595 1.40998 1.02497 0.84889 0.94430 1.26230 0.96194 1.00104
0.96593 1.69891 1.41157 1.32315 1.10967 0.85921 0.78975 0.78839
0.79866 1.15929 1.17103 1.20797 1.20391 0.80403 0.84104 0.87873
1.90591 1.50496 1.30314 1.77414 1.23079 1.07388 1.00929 0.92272
0.81544 1.23708 0.90277 1.00694 1.03647 1.22714 0.99622 0.80393
0.96873 0.79212 1.92810 1.89270 1.50833 1.85240 0.72920 0.85322
0.89827 0.90800 0.81616 0.90362
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -5.17 19.25 74.32 1.43 -3.73 15
2 C -0.23 -8.32 13.44 31.13 0.42 -7.90 15
3 C 0.19 7.43 4.28 84.58 0.36 7.79 15
4 N -0.47 -23.61 2.17 -645.42 -1.40 -25.01 15
5 C -0.34 -20.96 9.37 84.04 0.79 -20.17 15
6 H 0.04 2.73 7.89 -2.91 -0.02 2.70 15
7 C 0.01 0.65 5.25 84.93 0.45 1.10 15
8 N -0.91 -54.96 13.96 21.66 0.30 -54.66 15
9 Si 0.94 41.02 25.06 68.60 1.72 42.74 15
10 H -0.23 -8.78 6.67 99.48 0.66 -8.12 15
11 H -0.25 -10.22 7.11 99.48 0.71 -9.51 15
12 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15
13 C 0.48 23.60 7.34 87.66 0.64 24.24 15
14 O -0.60 -36.26 15.00 -3.06 -0.05 -36.31 15
15 C -0.22 -6.91 5.16 -11.54 -0.06 -6.97 15
16 H 0.17 3.86 6.53 -2.39 -0.02 3.84 15
17 C -0.15 -3.70 10.22 30.58 0.31 -3.39 15
18 C 0.04 1.10 7.82 30.58 0.24 1.34 15
19 H 0.19 3.01 8.14 -2.38 -0.02 2.99 15
20 F -0.20 -8.10 15.71 44.97 0.71 -7.39 15
21 H 0.25 4.77 7.80 -4.41 -0.03 4.74 15
22 H 0.13 3.72 6.28 -2.39 -0.01 3.70 15
23 H 0.08 3.39 3.53 -2.39 -0.01 3.38 15
24 H 0.28 15.52 8.31 -92.70 -0.77 14.75 15
25 H 0.17 2.42 8.14 -2.39 -0.02 2.40 15
26 H 0.08 2.46 8.14 -2.39 -0.02 2.44 15
Total: -1.00 -83.46 239.70 7.01 -76.45
By element:
Atomic # 1 Polarization: 10.71 SS G_CDS: 1.15 Total: 11.87 kcal
Atomic # 6 Polarization: -12.27 SS G_CDS: 4.58 Total: -7.68 kcal
Atomic # 7 Polarization: -78.57 SS G_CDS: -1.10 Total: -79.67 kcal
Atomic # 8 Polarization: -36.26 SS G_CDS: -0.05 Total: -36.31 kcal
Atomic # 9 Polarization: -8.10 SS G_CDS: 0.71 Total: -7.39 kcal
Atomic # 14 Polarization: 41.02 SS G_CDS: 1.72 Total: 42.74 kcal
Total: -83.46 7.01 -76.45 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001338917485.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.220 kcal
(2) G-P(sol) polarization free energy of solvation -83.462 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.242 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.015 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.447 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.227 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds