Wall clock time and date at job start Sun Mar 29 2020 22:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46864 * 203.00258 * 3 2 1 5 5 C 1.37093 * 120.00328 * 96.21067 * 4 3 2 6 6 H 1.07999 * 120.00457 * 216.48429 * 5 4 3 7 7 C 1.38950 * 119.99818 * 36.47745 * 5 4 3 8 8 N 1.31412 * 119.99898 * 203.27047 * 7 5 4 9 9 Si 1.86800 * 120.00000 * 23.26937 * 7 5 4 10 10 H 1.48496 * 109.47162 * 264.33126 * 9 7 5 11 11 H 1.48499 * 109.47273 * 24.33686 * 9 7 5 12 12 H 1.48509 * 109.46782 * 144.33482 * 9 7 5 13 13 C 1.34779 * 120.00128 * 276.20344 * 4 3 2 14 14 O 1.21290 * 120.00077 * 180.02562 * 13 4 3 15 15 C 1.50706 * 119.99925 * 0.02562 * 13 4 3 16 16 H 1.08999 * 115.55077 * 325.67380 * 15 13 4 17 17 C 1.53007 * 117.49575 * 111.37394 * 15 13 4 18 18 C 1.52992 * 117.49845 * 179.97438 * 15 13 4 19 19 H 1.09006 * 117.49681 * 145.02569 * 18 15 13 20 20 F 1.39901 * 117.49988 * 0.02562 * 18 15 13 21 21 H 4.40636 * 5.51440 * 180.02562 * 4 1 2 22 22 H 1.08998 * 109.46730 * 83.00413 * 3 2 1 23 23 H 1.08995 * 109.47265 * 323.00481 * 3 2 1 24 24 H 0.97007 * 120.00142 * 180.02562 * 8 7 5 25 25 H 1.08999 * 117.49655 * 214.98081 * 17 15 13 26 26 H 1.09001 * 117.49672 * 0.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2723 0.5397 5 6 3.4833 1.3668 1.8620 6 1 3.2780 2.2736 2.4114 7 6 4.1015 0.2956 2.4954 8 7 4.0308 0.1752 3.8021 9 14 5.0331 -0.9731 1.4895 10 1 4.1454 -2.1293 1.2064 11 1 5.4748 -0.3630 0.2097 12 1 6.2200 -1.4356 2.2530 13 6 3.2389 2.3493 -0.2636 14 8 3.6432 3.4020 0.1831 15 6 2.8543 2.2457 -1.7171 16 1 3.0612 1.2861 -2.1909 17 6 1.6069 3.0050 -2.1736 18 6 2.9958 3.5034 -2.5767 19 1 3.2957 3.3713 -3.6163 20 9 3.4727 4.6615 -1.9534 21 1 -1.0502 -0.0004 0.0000 22 1 3.0093 -0.1243 -1.0200 23 1 3.0097 -0.8199 0.6184 24 1 4.4627 -0.5724 4.2443 25 1 0.9929 2.5450 -2.9479 26 1 1.0648 3.5799 -1.4228 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338917485.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:53 Heat of formation + Delta-G solvation = -4.227159 kcal Electronic energy + Delta-G solvation = -13863.977619 eV Core-core repulsion = 11245.780807 eV Total energy + Delta-G solvation = -2618.196812 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.44509 -40.79443 -37.44300 -36.50672 -34.51452 -33.30300 -28.56082 -27.67171 -24.46674 -23.26194 -20.51049 -20.11129 -18.77323 -18.33387 -17.61052 -16.72295 -16.48480 -15.92643 -15.51379 -15.03650 -14.91415 -14.49520 -14.44495 -13.96423 -13.70151 -13.08910 -12.85980 -12.64859 -12.02814 -11.42015 -11.31477 -11.19631 -11.05783 -10.89090 -10.42137 -9.92952 -8.57361 -6.20524 1.15396 1.28076 1.42710 1.63697 1.77697 1.96452 2.14349 2.61084 2.78628 2.94295 3.25681 3.57011 3.73074 3.77895 4.05651 4.14444 4.28942 4.47880 4.74750 4.86286 5.11813 5.16787 5.46419 5.96103 6.45673 6.75615 6.86001 7.19098 7.78112 8.60271 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.031995 B = 0.012399 C = 0.010618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.916234 B = 2257.624632 C = 2636.431446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.232 4.232 3 C 0.191 3.809 4 N -0.469 5.469 5 C -0.342 4.342 6 H 0.038 0.962 7 C 0.011 3.989 8 N -0.907 5.907 9 Si 0.943 3.057 10 H -0.235 1.235 11 H -0.248 1.248 12 H -0.282 1.282 13 C 0.482 3.518 14 O -0.604 6.604 15 C -0.215 4.215 16 H 0.167 0.833 17 C -0.146 4.146 18 C 0.040 3.960 19 H 0.191 0.809 20 F -0.201 7.201 21 H 0.255 0.745 22 H 0.129 0.871 23 H 0.084 0.916 24 H 0.282 0.718 25 H 0.166 0.834 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 -4.714 -16.311 17.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.233 4.233 3 C 0.070 3.930 4 N -0.190 5.190 5 C -0.470 4.470 6 H 0.056 0.944 7 C -0.191 4.191 8 N -0.543 5.543 9 Si 0.764 3.236 10 H -0.159 1.159 11 H -0.171 1.171 12 H -0.208 1.208 13 C 0.272 3.728 14 O -0.488 6.488 15 C -0.237 4.237 16 H 0.185 0.815 17 C -0.183 4.183 18 C 0.004 3.996 19 H 0.208 0.792 20 F -0.182 7.182 21 H 0.271 0.729 22 H 0.147 0.853 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.184 0.816 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.130 -4.248 -15.853 17.195 hybrid contribution 0.437 -0.108 0.974 1.073 sum -4.693 -4.356 -14.879 16.198 Atomic orbital electron populations 1.25681 0.96477 0.97784 0.99509 1.23727 0.95222 1.02651 1.01740 1.19010 0.85471 0.87317 1.01200 1.43718 1.57255 1.09765 1.08246 1.18595 1.40998 1.02497 0.84889 0.94430 1.26230 0.96194 1.00104 0.96593 1.69891 1.41157 1.32315 1.10967 0.85921 0.78975 0.78839 0.79866 1.15929 1.17103 1.20797 1.20391 0.80403 0.84104 0.87873 1.90591 1.50496 1.30314 1.77414 1.23079 1.07388 1.00929 0.92272 0.81544 1.23708 0.90277 1.00694 1.03647 1.22714 0.99622 0.80393 0.96873 0.79212 1.92810 1.89270 1.50833 1.85240 0.72920 0.85322 0.89827 0.90800 0.81616 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.17 19.25 74.32 1.43 -3.73 15 2 C -0.23 -8.32 13.44 31.13 0.42 -7.90 15 3 C 0.19 7.43 4.28 84.58 0.36 7.79 15 4 N -0.47 -23.61 2.17 -645.42 -1.40 -25.01 15 5 C -0.34 -20.96 9.37 84.04 0.79 -20.17 15 6 H 0.04 2.73 7.89 -2.91 -0.02 2.70 15 7 C 0.01 0.65 5.25 84.93 0.45 1.10 15 8 N -0.91 -54.96 13.96 21.66 0.30 -54.66 15 9 Si 0.94 41.02 25.06 68.60 1.72 42.74 15 10 H -0.23 -8.78 6.67 99.48 0.66 -8.12 15 11 H -0.25 -10.22 7.11 99.48 0.71 -9.51 15 12 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 13 C 0.48 23.60 7.34 87.66 0.64 24.24 15 14 O -0.60 -36.26 15.00 -3.06 -0.05 -36.31 15 15 C -0.22 -6.91 5.16 -11.54 -0.06 -6.97 15 16 H 0.17 3.86 6.53 -2.39 -0.02 3.84 15 17 C -0.15 -3.70 10.22 30.58 0.31 -3.39 15 18 C 0.04 1.10 7.82 30.58 0.24 1.34 15 19 H 0.19 3.01 8.14 -2.38 -0.02 2.99 15 20 F -0.20 -8.10 15.71 44.97 0.71 -7.39 15 21 H 0.25 4.77 7.80 -4.41 -0.03 4.74 15 22 H 0.13 3.72 6.28 -2.39 -0.01 3.70 15 23 H 0.08 3.39 3.53 -2.39 -0.01 3.38 15 24 H 0.28 15.52 8.31 -92.70 -0.77 14.75 15 25 H 0.17 2.42 8.14 -2.39 -0.02 2.40 15 26 H 0.08 2.46 8.14 -2.39 -0.02 2.44 15 Total: -1.00 -83.46 239.70 7.01 -76.45 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.15 Total: 11.87 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 4.58 Total: -7.68 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -1.10 Total: -79.67 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.05 Total: -36.31 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.71 Total: -7.39 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.72 Total: 42.74 kcal Total: -83.46 7.01 -76.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338917485.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.220 kcal (2) G-P(sol) polarization free energy of solvation -83.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds