Wall clock time and date at job start Sun Mar 29 2020 22:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47201 * 150.21194 * 3 2 1 5 5 C 1.37093 * 120.00355 * 264.16747 * 4 3 2 6 6 H 1.07999 * 120.00540 * 197.37555 * 5 4 3 7 7 C 1.38952 * 120.00131 * 17.37640 * 5 4 3 8 8 N 1.31411 * 119.99850 * 21.58220 * 7 5 4 9 9 Si 1.86801 * 120.00114 * 201.59455 * 7 5 4 10 10 H 1.48495 * 109.47036 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47245 * 119.99866 * 9 7 5 12 12 H 1.48500 * 109.46884 * 239.99514 * 9 7 5 13 13 C 1.34783 * 119.99918 * 84.16609 * 4 3 2 14 14 O 1.21289 * 120.00025 * 179.97438 * 13 4 3 15 15 C 1.50699 * 119.99832 * 0.02562 * 13 4 3 16 16 H 1.08997 * 115.54968 * 325.67131 * 15 13 4 17 17 C 1.53000 * 117.49780 * 179.97438 * 15 13 4 18 18 C 1.52999 * 60.03613 * 252.47654 * 17 15 13 19 19 H 1.08997 * 117.49946 * 252.52062 * 18 17 15 20 20 F 1.39899 * 117.49385 * 107.49831 * 18 17 15 21 21 H 4.40641 * 5.51465 * 179.97438 * 4 1 2 22 22 H 1.09007 * 109.47391 * 30.21465 * 3 2 1 23 23 H 1.09000 * 109.47040 * 270.21424 * 3 2 1 24 24 H 0.97002 * 119.99941 * 180.02562 * 8 7 5 25 25 H 1.09001 * 117.49780 * 359.97438 * 17 15 13 26 26 H 1.09007 * 117.49591 * 144.97215 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.1995 -0.6862 5 6 3.4760 1.1390 -2.0123 6 1 4.0874 1.9152 -2.4483 7 6 3.0364 0.0788 -2.7956 8 7 1.9853 -0.6187 -2.4272 9 14 3.9396 -0.3551 -4.3721 10 1 5.0808 0.5760 -4.5610 11 1 4.4459 -1.7483 -4.2851 12 1 3.0095 -0.2375 -5.5238 13 6 3.2460 2.3622 -0.0137 14 8 3.6503 3.3547 -0.5816 15 6 2.8702 2.4287 1.4442 16 1 2.0377 1.7925 1.7446 17 6 3.0205 3.7769 2.1517 18 6 3.9986 2.6406 2.4568 19 1 3.9076 2.1441 3.4229 20 9 5.3005 2.7578 1.9584 21 1 -1.0503 -0.0004 0.0000 22 1 3.0097 -0.8873 -0.5172 23 1 3.0092 -0.0030 1.0277 24 1 1.6786 -1.3590 -2.9738 25 1 3.3916 4.6157 1.5627 26 1 2.2863 4.0282 2.9172 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338917667.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:54 Heat of formation + Delta-G solvation = 13.122853 kcal Electronic energy + Delta-G solvation = -13864.373423 eV Core-core repulsion = 11246.928963 eV Total energy + Delta-G solvation = -2617.444459 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.16743 -38.78946 -35.73109 -34.64958 -32.08102 -31.20869 -26.59670 -25.37758 -22.80405 -22.04474 -18.73398 -17.88177 -17.18912 -16.44155 -15.63231 -15.15614 -14.38387 -14.30372 -13.94199 -13.66563 -12.81509 -12.42541 -12.26604 -12.20013 -11.61617 -11.45103 -11.01798 -10.49965 -10.37194 -9.96457 -9.71825 -9.37683 -9.28482 -8.91976 -8.47564 -7.87174 -6.34878 -3.85865 3.10176 3.26002 3.33448 3.38778 3.76995 3.99654 4.15614 4.18302 4.58600 4.70125 5.02722 5.07822 5.27730 5.45020 5.46530 5.84561 5.96324 6.21388 6.32621 6.44855 6.73929 7.00386 7.55846 8.04233 8.42106 8.77909 9.12700 9.34680 9.90771 10.66223 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.033477 B = 0.011701 C = 0.009602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.200520 B = 2392.284935 C = 2915.372104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.114 4.114 3 C 0.232 3.768 4 N -0.434 5.434 5 C -0.313 4.313 6 H 0.105 0.895 7 C 0.030 3.970 8 N -0.862 5.862 9 Si 0.922 3.078 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.478 3.522 14 O -0.577 6.577 15 C -0.187 4.187 16 H 0.125 0.875 17 C -0.165 4.165 18 C 0.031 3.969 19 H 0.133 0.867 20 F -0.178 7.178 21 H 0.200 0.800 22 H 0.111 0.889 23 H 0.063 0.937 24 H 0.268 0.732 25 H 0.114 0.886 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 -0.463 8.667 8.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.116 4.116 3 C 0.108 3.892 4 N -0.151 5.151 5 C -0.440 4.440 6 H 0.123 0.877 7 C -0.174 4.174 8 N -0.500 5.500 9 Si 0.748 3.252 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.209 1.209 13 C 0.266 3.734 14 O -0.461 6.461 15 C -0.209 4.209 16 H 0.143 0.857 17 C -0.203 4.203 18 C -0.006 4.006 19 H 0.150 0.850 20 F -0.158 7.158 21 H 0.217 0.783 22 H 0.128 0.872 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.132 0.868 26 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.313 -0.150 8.252 8.260 hybrid contribution -0.097 -0.499 -0.925 1.056 sum -0.410 -0.649 7.327 7.367 Atomic orbital electron populations 1.24289 0.95372 1.02538 1.05698 1.23213 0.94373 0.98251 0.95758 1.18276 0.84191 0.91565 0.95118 1.43592 1.55603 1.06008 1.09922 1.19728 1.30054 1.09858 0.84337 0.87729 1.25302 0.95189 0.97459 0.99436 1.70102 1.19741 1.20653 1.39464 0.85940 0.79746 0.78437 0.81067 1.19148 1.20549 1.20872 1.18900 0.84460 0.83501 0.86494 1.90516 1.51067 1.34801 1.69732 1.23100 1.01243 1.01941 0.94571 0.85682 1.23539 1.01021 0.93347 1.02401 1.22050 0.76140 1.05143 0.97254 0.85001 1.92825 1.37281 1.96574 1.89162 0.78324 0.87167 0.91933 0.92163 0.86762 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.33 19.25 29.55 0.57 -4.76 15 2 C -0.11 -2.55 10.73 -37.13 -0.40 -2.95 15 3 C 0.23 5.18 4.80 -6.83 -0.03 5.15 15 4 N -0.43 -11.25 2.60 -117.94 -0.31 -11.56 15 5 C -0.31 -8.78 9.33 -14.93 -0.14 -8.92 15 6 H 0.11 3.11 7.38 -52.49 -0.39 2.73 15 7 C 0.03 0.80 4.86 -17.47 -0.08 0.71 15 8 N -0.86 -22.70 9.48 55.50 0.53 -22.17 15 9 Si 0.92 20.66 29.60 -169.99 -5.03 15.63 15 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 13 C 0.48 12.07 6.99 -10.98 -0.08 11.99 15 14 O -0.58 -16.63 15.90 5.55 0.09 -16.54 15 15 C -0.19 -3.53 4.81 -91.73 -0.44 -3.97 15 16 H 0.13 2.13 6.72 -51.93 -0.35 1.79 15 17 C -0.17 -2.62 10.03 -26.73 -0.27 -2.89 15 18 C 0.03 0.49 7.83 -26.69 -0.21 0.29 15 19 H 0.13 1.51 8.14 -51.93 -0.42 1.08 15 20 F -0.18 -3.52 17.14 2.25 0.04 -3.48 15 21 H 0.20 3.29 7.80 -54.08 -0.42 2.87 15 22 H 0.11 2.59 6.44 -51.92 -0.33 2.26 15 23 H 0.06 1.17 6.98 -51.93 -0.36 0.81 15 24 H 0.27 6.72 8.31 -40.82 -0.34 6.38 15 25 H 0.11 2.06 7.67 -51.93 -0.40 1.66 15 26 H 0.11 1.29 8.14 -51.93 -0.42 0.86 15 LS Contribution 242.27 15.07 3.65 3.65 Total: -1.00 -32.33 242.27 -4.35 -36.68 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -2.23 Total: 3.15 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.08 Total: -5.35 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.22 Total: -33.73 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.09 Total: -16.54 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.04 Total: -3.48 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.33 -4.35 -36.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338917667.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.802 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds