Wall clock time and date at job start Sun Mar 29 2020 22:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36253 * 116.99839 * 2 1 4 4 C 1.35397 * 126.07042 * 0.02562 * 3 2 1 5 5 N 1.36025 * 107.73250 * 180.24674 * 4 3 2 6 6 H 0.96997 * 126.01020 * 179.72471 * 5 4 3 7 7 N 1.40073 * 107.97470 * 359.57892 * 5 4 3 8 8 C 1.31403 * 108.26215 * 0.43087 * 7 5 4 9 9 N 1.39708 * 125.91768 * 179.76456 * 8 7 5 10 10 C 1.34776 * 119.99822 * 359.96890 * 9 8 7 11 11 O 1.21766 * 120.00343 * 0.02562 * 10 9 8 12 12 C 1.41841 * 119.99918 * 179.97438 * 10 9 8 13 13 H 1.07992 * 120.00097 * 353.77306 * 12 10 9 14 14 C 1.40136 * 119.99828 * 173.76632 * 12 10 9 15 15 N 1.30628 * 119.99961 * 6.25405 * 14 12 10 16 16 Si 1.86801 * 119.99801 * 186.25547 * 14 12 10 17 17 H 1.48493 * 109.46978 * 94.98909 * 16 14 12 18 18 H 1.48505 * 109.46714 * 214.98612 * 16 14 12 19 19 H 1.48500 * 109.47240 * 334.98536 * 16 14 12 20 20 H 1.09003 * 109.47092 * 60.00393 * 1 2 3 21 21 H 1.09004 * 109.46769 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47219 * 300.00011 * 1 2 3 23 23 H 1.08002 * 126.13698 * 359.97438 * 4 3 2 24 24 H 0.97002 * 120.00592 * 179.97438 * 9 8 7 25 25 H 0.97001 * 120.00026 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0476 1.2140 0.0000 4 6 1.4343 2.4212 0.0005 5 7 2.4018 3.3774 -0.0053 6 1 2.2558 4.3363 -0.0101 7 7 3.6458 2.7336 0.0004 8 6 3.4380 1.4361 -0.0002 9 7 4.4256 0.4480 -0.0002 10 6 5.7276 0.7965 -0.0003 11 8 6.0431 1.9726 0.0001 12 6 6.7303 -0.2067 0.0002 13 1 6.4544 -1.2458 0.1022 14 6 8.0789 0.1505 -0.1316 15 7 8.4238 1.4105 -0.1321 16 14 9.3834 -1.1750 -0.3067 17 1 9.6693 -1.4011 -1.7462 18 1 10.6253 -0.7413 0.3824 19 1 8.8927 -2.4363 0.3047 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.3682 2.5940 0.0006 24 1 4.1744 -0.4890 -0.0002 25 1 9.3573 1.6578 -0.2230 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339616468.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:49 Heat of formation + Delta-G solvation = 12.682478 kcal Electronic energy + Delta-G solvation = -13564.070409 eV Core-core repulsion = 10966.526816 eV Total energy + Delta-G solvation = -2597.543594 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.64279 -37.61155 -37.18593 -33.39297 -32.23473 -29.56087 -28.76750 -26.86703 -26.46128 -22.02978 -20.43667 -18.98247 -18.37907 -16.91584 -15.84400 -15.51061 -15.38382 -14.91271 -14.37406 -13.89170 -13.82815 -12.66582 -12.43953 -12.38424 -11.39867 -11.14885 -11.07972 -11.01024 -10.51692 -10.23110 -9.90590 -9.76662 -8.81490 -7.83938 -7.56346 -6.95992 -6.24946 -4.75053 2.41785 3.12936 3.20230 3.23785 3.26583 3.51087 3.86551 4.11068 4.60619 4.67681 5.14269 5.30008 5.31504 5.57399 5.78135 5.90061 5.91238 6.60252 7.36911 7.54213 7.71475 7.99388 8.13390 8.29361 8.52038 8.93733 9.49772 10.53691 10.76553 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.054352 B = 0.008041 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.038089 B = 3481.319329 C = 3978.311036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.305 6.305 3 C -0.060 4.060 4 C -0.023 4.023 5 N -0.491 5.491 6 H 0.438 0.562 7 N -0.254 5.254 8 C 0.328 3.672 9 N -0.659 5.659 10 C 0.539 3.461 11 O -0.539 6.539 12 C -0.540 4.540 13 H 0.071 0.929 14 C 0.088 3.912 15 N -0.751 5.751 16 Si 0.913 3.087 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.263 1.263 20 H 0.045 0.955 21 H 0.092 0.908 22 H 0.045 0.955 23 H 0.167 0.833 24 H 0.402 0.598 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.106 -1.957 -0.112 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.217 6.217 3 C -0.118 4.118 4 C -0.168 4.168 5 N -0.207 5.207 6 H 0.282 0.718 7 N -0.088 5.088 8 C 0.068 3.932 9 N -0.312 5.312 10 C 0.346 3.654 11 O -0.417 6.417 12 C -0.576 4.576 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.379 5.379 16 Si 0.737 3.263 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.187 1.187 20 H 0.063 0.937 21 H 0.110 0.890 22 H 0.063 0.937 23 H 0.184 0.816 24 H 0.237 0.763 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.692 -0.349 -0.115 11.697 hybrid contribution -0.652 -1.138 -0.102 1.316 sum -12.343 -1.487 -0.217 12.434 Atomic orbital electron populations 1.22853 0.79754 1.03050 1.00351 1.86027 1.19732 1.24399 1.91590 1.18592 0.90836 0.84912 1.17456 1.21996 0.95472 0.88870 1.10423 1.45864 1.03543 1.07902 1.63349 0.71849 1.78391 0.98216 1.03456 1.28698 1.19328 0.85794 0.89516 0.98567 1.43971 1.04918 1.06047 1.76228 1.17234 0.79266 0.90467 0.78475 1.90734 1.79024 1.19189 1.52778 1.19989 0.90726 0.93977 1.52873 0.91079 1.25738 0.99318 0.95738 0.92602 1.70033 1.17931 1.17091 1.32803 0.86271 0.79754 0.81334 0.78921 1.19665 1.20359 1.18665 0.93664 0.88985 0.93655 0.81571 0.76345 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.12 101.05 1.02 1.41 15 2 O -0.31 -5.06 10.59 -20.55 -0.22 -5.27 15 3 C -0.06 -1.14 7.03 -39.62 -0.28 -1.42 15 4 C -0.02 -0.35 11.05 -16.71 -0.18 -0.53 15 5 N -0.49 -8.56 7.40 30.66 0.23 -8.33 15 6 H 0.44 5.79 8.96 -182.62 -1.64 4.15 15 7 N -0.25 -6.20 10.90 31.46 0.34 -5.86 15 8 C 0.33 7.78 7.82 -154.53 -1.21 6.57 15 9 N -0.66 -16.56 5.42 -13.65 -0.07 -16.63 15 10 C 0.54 16.09 7.53 -14.88 -0.11 15.98 15 11 O -0.54 -18.14 13.61 5.13 0.07 -18.07 15 12 C -0.54 -15.43 9.31 -37.49 -0.35 -15.78 15 13 H 0.07 1.84 7.86 -52.49 -0.41 1.42 15 14 C 0.09 2.47 5.49 -17.35 -0.10 2.37 15 15 N -0.75 -22.59 11.76 55.55 0.65 -21.94 15 16 Si 0.91 20.04 29.56 -169.99 -5.03 15.02 15 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 19 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 20 H 0.04 0.42 8.08 -51.93 -0.42 0.00 15 21 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.04 0.42 8.08 -51.93 -0.42 0.00 15 23 H 0.17 1.71 7.61 -52.49 -0.40 1.31 15 24 H 0.40 8.80 8.78 -40.82 -0.36 8.44 15 25 H 0.27 7.34 8.29 -40.82 -0.34 7.00 15 LS Contribution 234.73 15.07 3.54 3.54 Total: -1.00 -37.50 234.73 -4.90 -42.40 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.20 Total: 6.55 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.21 Total: 8.61 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 1.15 Total: -52.77 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.15 Total: -23.34 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -37.50 -4.90 -42.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339616468.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.081 kcal (2) G-P(sol) polarization free energy of solvation -37.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds