Wall clock time and date at job start Sun Mar 29 2020 22:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36253 * 116.99839 * 2 1 4 4 C 1.35397 * 126.07042 * 0.02562 * 3 2 1 5 5 N 1.36025 * 107.73250 * 180.24674 * 4 3 2 6 6 H 0.96997 * 126.01020 * 179.72471 * 5 4 3 7 7 N 1.40073 * 107.97470 * 359.57892 * 5 4 3 8 8 C 1.31403 * 108.26215 * 0.43087 * 7 5 4 9 9 N 1.39708 * 125.91768 * 179.76456 * 8 7 5 10 10 C 1.34776 * 119.99822 * 359.96890 * 9 8 7 11 11 O 1.21766 * 120.00343 * 0.02562 * 10 9 8 12 12 C 1.41841 * 119.99918 * 179.97438 * 10 9 8 13 13 H 1.07992 * 120.00097 * 353.77306 * 12 10 9 14 14 C 1.40136 * 119.99828 * 173.76632 * 12 10 9 15 15 N 1.30628 * 119.99961 * 6.25405 * 14 12 10 16 16 Si 1.86801 * 119.99801 * 186.25547 * 14 12 10 17 17 H 1.48493 * 109.46978 * 94.98909 * 16 14 12 18 18 H 1.48505 * 109.46714 * 214.98612 * 16 14 12 19 19 H 1.48500 * 109.47240 * 334.98536 * 16 14 12 20 20 H 1.09003 * 109.47092 * 60.00393 * 1 2 3 21 21 H 1.09004 * 109.46769 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47219 * 300.00011 * 1 2 3 23 23 H 1.08002 * 126.13698 * 359.97438 * 4 3 2 24 24 H 0.97002 * 120.00592 * 179.97438 * 9 8 7 25 25 H 0.97001 * 120.00026 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0476 1.2140 0.0000 4 6 1.4343 2.4212 0.0005 5 7 2.4018 3.3774 -0.0053 6 1 2.2558 4.3363 -0.0101 7 7 3.6458 2.7336 0.0004 8 6 3.4380 1.4361 -0.0002 9 7 4.4256 0.4480 -0.0002 10 6 5.7276 0.7965 -0.0003 11 8 6.0431 1.9726 0.0001 12 6 6.7303 -0.2067 0.0002 13 1 6.4544 -1.2458 0.1022 14 6 8.0789 0.1505 -0.1316 15 7 8.4238 1.4105 -0.1321 16 14 9.3834 -1.1750 -0.3067 17 1 9.6693 -1.4011 -1.7462 18 1 10.6253 -0.7413 0.3824 19 1 8.8927 -2.4363 0.3047 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.3682 2.5940 0.0006 24 1 4.1744 -0.4890 -0.0002 25 1 9.3573 1.6578 -0.2230 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339616468.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:49 Heat of formation + Delta-G solvation = -18.518298 kcal Electronic energy + Delta-G solvation = -13565.423377 eV Core-core repulsion = 10966.526816 eV Total energy + Delta-G solvation = -2598.896561 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.14058 -39.42661 -38.68331 -35.37162 -34.40405 -31.28189 -30.14192 -28.60076 -27.80942 -23.86701 -21.88696 -20.84211 -19.92287 -18.79458 -17.47927 -17.08984 -16.72594 -16.65965 -15.92184 -15.41202 -15.31202 -14.48655 -14.37234 -13.88210 -13.15574 -12.83497 -12.65017 -12.29965 -12.03933 -11.97337 -11.59851 -11.49782 -10.89961 -9.82290 -9.47105 -8.56336 -8.35626 -6.97458 1.01726 1.41624 1.42055 1.60260 1.84696 1.92142 2.25128 2.54117 2.59324 3.18417 3.71321 3.92779 4.27934 4.46275 4.59176 4.64037 4.85655 5.11727 5.25921 5.85168 6.03806 6.17278 6.57434 6.63823 6.77252 6.89522 7.52658 8.44611 8.62208 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.054352 B = 0.008041 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.038089 B = 3481.319329 C = 3978.311036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.327 6.327 3 C -0.075 4.075 4 C 0.017 3.983 5 N -0.475 5.475 6 H 0.455 0.545 7 N -0.322 5.322 8 C 0.288 3.712 9 N -0.659 5.659 10 C 0.522 3.478 11 O -0.591 6.591 12 C -0.566 4.566 13 H 0.092 0.908 14 C 0.030 3.970 15 N -0.805 5.805 16 Si 1.007 2.993 17 H -0.261 1.261 18 H -0.270 1.270 19 H -0.245 1.245 20 H 0.063 0.937 21 H 0.113 0.887 22 H 0.063 0.937 23 H 0.230 0.770 24 H 0.413 0.587 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.798 -3.211 -0.220 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.241 6.241 3 C -0.132 4.132 4 C -0.129 4.129 5 N -0.192 5.192 6 H 0.302 0.698 7 N -0.156 5.156 8 C 0.030 3.970 9 N -0.311 5.311 10 C 0.330 3.670 11 O -0.474 6.474 12 C -0.602 4.602 13 H 0.110 0.890 14 C -0.187 4.187 15 N -0.434 5.434 16 Si 0.825 3.175 17 H -0.186 1.186 18 H -0.195 1.195 19 H -0.168 1.168 20 H 0.082 0.918 21 H 0.131 0.869 22 H 0.082 0.918 23 H 0.247 0.753 24 H 0.250 0.750 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.457 -1.610 -0.219 13.555 hybrid contribution -0.361 -0.677 -0.058 0.769 sum -13.818 -2.287 -0.278 14.008 Atomic orbital electron populations 1.23254 0.76523 1.05196 1.02038 1.85994 1.22950 1.23368 1.91758 1.18530 0.89075 0.86984 1.18562 1.22831 0.97372 0.86716 1.05966 1.45848 1.02293 1.09207 1.61880 0.69764 1.78208 1.02246 1.04745 1.30358 1.19626 0.87709 0.89342 1.00369 1.43434 1.04330 1.07113 1.76225 1.17663 0.81051 0.90140 0.78155 1.90675 1.80563 1.20987 1.55203 1.20549 0.91607 0.94817 1.53215 0.88951 1.27089 1.01960 0.98624 0.91059 1.70195 1.19098 1.20307 1.33802 0.84877 0.75607 0.77608 0.79377 1.18609 1.19492 1.16821 0.91845 0.86909 0.91830 0.75344 0.75041 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.12 113.37 1.15 1.58 15 2 O -0.33 -10.20 10.59 -96.45 -1.02 -11.23 15 3 C -0.07 -2.71 7.03 22.24 0.16 -2.55 15 4 C 0.02 0.47 11.05 83.39 0.92 1.39 15 5 N -0.47 -15.86 7.40 -56.90 -0.42 -16.28 15 6 H 0.46 11.21 8.96 -213.34 -1.91 9.30 15 7 N -0.32 -16.10 10.90 -54.38 -0.59 -16.69 15 8 C 0.29 13.95 7.82 133.53 1.04 15.00 15 9 N -0.66 -34.38 5.42 -315.28 -1.71 -36.09 15 10 C 0.52 32.61 7.53 85.13 0.64 33.25 15 11 O -0.59 -41.98 13.61 -4.56 -0.06 -42.04 15 12 C -0.57 -33.17 9.31 23.62 0.22 -32.95 15 13 H 0.09 4.80 7.86 -2.91 -0.02 4.77 15 14 C 0.03 1.71 5.49 85.33 0.47 2.18 15 15 N -0.81 -50.14 11.76 21.85 0.26 -49.89 15 16 Si 1.01 41.12 29.56 68.60 2.03 43.15 15 17 H -0.26 -10.19 7.11 99.48 0.71 -9.49 15 18 H -0.27 -10.57 7.11 99.48 0.71 -9.87 15 19 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 20 H 0.06 0.89 8.08 -2.39 -0.02 0.87 15 21 H 0.11 1.50 8.14 -2.38 -0.02 1.48 15 22 H 0.06 0.89 8.08 -2.39 -0.02 0.88 15 23 H 0.23 3.24 7.61 -2.91 -0.02 3.22 15 24 H 0.41 18.72 8.78 -92.71 -0.81 17.90 15 25 H 0.28 15.54 8.29 -92.71 -0.77 14.77 15 Total: -1.00 -87.44 234.73 1.60 -85.84 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -1.48 Total: 25.32 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 4.60 Total: 17.89 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -2.47 Total: -118.95 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -1.08 Total: -53.27 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -87.44 1.60 -85.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339616468.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.327 kcal (2) G-P(sol) polarization free energy of solvation -87.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds