Wall clock time and date at job start Sun Mar 29 2020 22:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99806 * 2 1 4 4 H 1.48503 * 109.47248 * 270.00063 * 3 2 1 5 5 H 1.48506 * 109.47066 * 29.99840 * 3 2 1 6 6 H 1.48500 * 109.47144 * 149.99871 * 3 2 1 7 7 C 1.37873 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00150 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00508 * 180.02562 * 7 2 1 10 10 N 1.46494 * 109.47536 * 179.97438 * 9 7 2 11 11 C 1.34782 * 120.00277 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99588 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99898 * 180.02562 * 11 10 9 14 14 N 1.46503 * 109.46866 * 179.97438 * 13 11 10 15 15 N 1.28884 * 125.44630 * 90.00125 * 14 13 11 16 16 C 1.31040 * 107.91783 * 180.02562 * 15 14 13 17 17 N 1.33322 * 106.89561 * 359.97438 * 16 15 14 18 18 N 1.28776 * 125.45117 * 270.02229 * 14 13 11 19 19 H 0.97001 * 120.00885 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47479 * 59.99229 * 9 7 2 21 21 H 1.09003 * 109.46744 * 300.00115 * 9 7 2 22 22 H 0.97000 * 119.99825 * 359.97438 * 10 9 7 23 23 H 1.09003 * 109.47503 * 60.00340 * 13 11 10 24 24 H 1.08998 * 109.47118 * 300.00094 * 13 11 10 25 25 H 1.07994 * 126.55629 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5751 -0.0001 11 6 5.3251 -2.8213 -0.0001 12 8 6.1131 -1.8995 0.0004 13 6 5.8274 -4.2421 -0.0008 14 7 7.2924 -4.2420 -0.0014 15 7 8.0403 -4.2424 1.0483 16 6 9.2897 -4.2416 0.6532 17 7 9.2744 -4.2414 -0.6800 18 7 8.0389 -4.2412 -1.0507 19 1 -0.4851 0.8400 -0.0004 20 1 3.8746 -0.6806 0.8904 21 1 3.8751 -0.6795 -0.8895 22 1 3.3696 -3.3124 -0.0001 23 1 5.4642 -4.7555 -0.8911 24 1 5.4640 -4.7564 0.8888 25 1 10.1645 -4.2413 1.2863 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347487708.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:03 Heat of formation + Delta-G solvation = 95.756849 kcal Electronic energy + Delta-G solvation = -13268.788307 eV Core-core repulsion = 10707.139839 eV Total energy + Delta-G solvation = -2561.648467 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.081 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.28189 -39.35404 -35.03073 -34.52299 -33.03998 -32.54141 -29.81476 -27.62962 -23.92491 -23.51750 -22.03109 -20.42492 -18.23204 -17.85610 -16.78662 -15.89793 -15.84211 -15.29285 -14.87383 -14.15429 -13.82675 -13.20595 -13.13890 -12.49246 -12.21723 -11.88914 -11.17541 -11.09343 -10.94965 -10.87767 -10.58357 -10.08472 -9.64717 -9.57095 -8.91964 -8.46029 -6.32140 -4.36160 1.23020 1.82109 2.27899 2.70984 3.19603 3.26643 3.34100 3.51405 4.08742 4.23782 4.40119 4.69535 4.86121 4.94221 5.03185 5.70095 5.77253 6.07278 6.59620 6.87695 6.88891 7.19524 7.85118 8.26412 8.38845 8.44672 8.66463 9.26385 10.79420 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.072558 B = 0.006340 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.802928 B = 4415.519743 C = 4634.400848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.221 3.779 10 N -0.692 5.692 11 C 0.490 3.510 12 O -0.539 6.539 13 C 0.107 3.893 14 N -0.120 5.120 15 N -0.301 5.301 16 C 0.140 3.860 17 N -0.291 5.291 18 N -0.050 5.050 19 H 0.269 0.731 20 H 0.029 0.971 21 H 0.025 0.975 22 H 0.401 0.599 23 H 0.145 0.855 24 H 0.144 0.856 25 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.882 -9.698 1.574 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.100 0.900 9 C 0.100 3.900 10 N -0.341 5.341 11 C 0.271 3.729 12 O -0.416 6.416 13 C -0.018 4.018 14 N -0.031 5.031 15 N -0.151 5.151 16 C -0.164 4.164 17 N -0.162 5.162 18 N -0.044 5.044 19 H 0.079 0.921 20 H 0.047 0.953 21 H 0.043 0.957 22 H 0.236 0.764 23 H 0.163 0.837 24 H 0.162 0.838 25 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 10.867 -8.889 1.031 14.077 hybrid contribution 0.260 0.610 0.544 0.858 sum 11.127 -8.279 1.575 13.958 Atomic orbital electron populations 1.69858 1.06203 1.27635 1.48822 1.24768 0.94794 0.99171 0.93685 0.86835 0.80529 0.83265 0.79173 1.19725 1.20727 1.18587 1.21022 0.88140 0.95395 1.54069 0.90011 1.19605 0.95549 0.77674 0.97216 1.46081 1.04579 1.11895 1.71526 1.20137 0.84276 0.89452 0.78987 1.90772 1.55375 1.45275 1.50192 1.22144 0.71194 0.99497 1.08944 1.49525 1.09488 1.43176 1.00936 1.74693 1.03716 1.20832 1.15851 1.27298 0.95057 1.02522 0.91480 1.75848 1.10046 1.18391 1.11892 1.78975 0.96511 1.14781 1.14163 0.92073 0.95334 0.95741 0.76426 0.83685 0.83824 0.74955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.96 55.43 0.77 -24.76 15 2 C 0.08 2.19 5.47 -17.83 -0.10 2.09 15 3 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 15 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 15 7 C -0.55 -14.24 9.83 -34.44 -0.34 -14.58 15 8 H 0.08 2.18 7.84 -52.48 -0.41 1.77 15 9 C 0.22 5.11 4.50 -5.20 -0.02 5.08 15 10 N -0.69 -12.31 5.55 -61.48 -0.34 -12.65 15 11 C 0.49 8.39 7.90 -10.98 -0.09 8.30 15 12 O -0.54 -11.96 16.43 5.56 0.09 -11.87 15 13 C 0.11 1.23 7.08 -5.19 -0.04 1.19 15 14 N -0.12 -1.75 3.49 -11.72 -0.04 -1.79 15 15 N -0.30 -4.35 12.13 29.34 0.36 -4.00 15 16 C 0.14 1.77 13.26 -91.58 -1.21 0.55 15 17 N -0.29 -4.43 12.50 29.33 0.37 -4.07 15 18 N -0.05 -0.81 13.25 60.35 0.80 -0.01 15 19 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 20 H 0.03 0.70 7.20 -51.93 -0.37 0.33 15 21 H 0.02 0.60 7.57 -51.93 -0.39 0.20 15 22 H 0.40 5.79 8.32 -40.82 -0.34 5.45 15 23 H 0.15 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.14 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.23 1.73 8.06 -52.49 -0.42 1.31 15 LS Contribution 237.15 15.07 3.57 3.57 Total: -1.00 -34.53 237.15 -2.84 -37.37 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -1.95 Total: -0.61 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.80 Total: 2.64 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 1.91 Total: -47.28 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -34.53 -2.84 -37.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347487708.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.131 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds