Wall clock time and date at job start Sun Mar 29 2020 22:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99806 * 2 1 4 4 H 1.48503 * 109.47248 * 270.00063 * 3 2 1 5 5 H 1.48506 * 109.47066 * 29.99840 * 3 2 1 6 6 H 1.48500 * 109.47144 * 149.99871 * 3 2 1 7 7 C 1.37873 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00150 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00508 * 180.02562 * 7 2 1 10 10 N 1.46494 * 109.47536 * 179.97438 * 9 7 2 11 11 C 1.34782 * 120.00277 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99588 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99898 * 180.02562 * 11 10 9 14 14 N 1.46503 * 109.46866 * 179.97438 * 13 11 10 15 15 N 1.28884 * 125.44630 * 90.00125 * 14 13 11 16 16 C 1.31040 * 107.91783 * 180.02562 * 15 14 13 17 17 N 1.33322 * 106.89561 * 359.97438 * 16 15 14 18 18 N 1.28776 * 125.45117 * 270.02229 * 14 13 11 19 19 H 0.97001 * 120.00885 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47479 * 59.99229 * 9 7 2 21 21 H 1.09003 * 109.46744 * 300.00115 * 9 7 2 22 22 H 0.97000 * 119.99825 * 359.97438 * 10 9 7 23 23 H 1.09003 * 109.47503 * 60.00340 * 13 11 10 24 24 H 1.08998 * 109.47118 * 300.00094 * 13 11 10 25 25 H 1.07994 * 126.55629 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5751 -0.0001 11 6 5.3251 -2.8213 -0.0001 12 8 6.1131 -1.8995 0.0004 13 6 5.8274 -4.2421 -0.0008 14 7 7.2924 -4.2420 -0.0014 15 7 8.0403 -4.2424 1.0483 16 6 9.2897 -4.2416 0.6532 17 7 9.2744 -4.2414 -0.6800 18 7 8.0389 -4.2412 -1.0507 19 1 -0.4851 0.8400 -0.0004 20 1 3.8746 -0.6806 0.8904 21 1 3.8751 -0.6795 -0.8895 22 1 3.3696 -3.3124 -0.0001 23 1 5.4642 -4.7555 -0.8911 24 1 5.4640 -4.7564 0.8888 25 1 10.1645 -4.2413 1.2863 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347487708.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:03 Heat of formation + Delta-G solvation = 67.912399 kcal Electronic energy + Delta-G solvation = -13269.995733 eV Core-core repulsion = 10707.139839 eV Total energy + Delta-G solvation = -2562.855893 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.081 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.33452 -40.79939 -36.44367 -35.90709 -34.50964 -34.08706 -31.18623 -29.23249 -25.00418 -24.89461 -23.60906 -21.86901 -19.70917 -18.92080 -18.46148 -17.24672 -17.09312 -16.78440 -16.23322 -15.79499 -14.96765 -14.84231 -14.53717 -14.37550 -13.59184 -13.13739 -12.95157 -12.74488 -12.24071 -12.03318 -11.97953 -11.71569 -11.66513 -10.97861 -10.94573 -10.11939 -8.41839 -6.48792 0.11928 0.85423 1.27826 1.30263 1.34425 1.38974 1.44914 2.21574 2.26040 2.93921 3.20460 3.50171 3.56379 3.94517 4.05986 4.69986 4.75057 4.81112 4.96664 5.07104 5.21651 5.33204 6.02748 6.50456 6.62485 7.06958 7.23043 7.32473 8.72449 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.072558 B = 0.006340 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.802928 B = 4415.519743 C = 4634.400848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.231 3.769 10 N -0.687 5.687 11 C 0.492 3.508 12 O -0.592 6.592 13 C 0.113 3.887 14 N -0.123 5.123 15 N -0.318 5.318 16 C 0.147 3.853 17 N -0.313 5.313 18 N -0.073 5.073 19 H 0.273 0.727 20 H 0.014 0.986 21 H 0.013 0.987 22 H 0.419 0.581 23 H 0.187 0.813 24 H 0.187 0.813 25 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.905 -10.606 1.947 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.108 3.892 10 N -0.337 5.337 11 C 0.277 3.723 12 O -0.473 6.473 13 C -0.010 4.010 14 N -0.036 5.036 15 N -0.168 5.168 16 C -0.155 4.155 17 N -0.183 5.183 18 N -0.067 5.067 19 H 0.082 0.918 20 H 0.032 0.968 21 H 0.031 0.969 22 H 0.257 0.743 23 H 0.204 0.796 24 H 0.204 0.796 25 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 11.881 -9.844 1.399 15.492 hybrid contribution -0.037 0.829 0.451 0.945 sum 11.844 -9.015 1.850 14.999 Atomic orbital electron populations 1.69954 1.07571 1.28606 1.50541 1.25516 0.95451 1.02410 0.93729 0.85949 0.79232 0.79903 0.79326 1.19207 1.19927 1.18728 1.21259 0.89619 0.94829 1.52591 0.91364 1.19157 0.93614 0.80540 0.95922 1.45795 1.05731 1.10433 1.71754 1.20963 0.83110 0.91450 0.76814 1.90751 1.56523 1.47747 1.52312 1.22435 0.69969 0.95469 1.13115 1.49785 1.10278 1.42847 1.00694 1.74693 1.04458 1.21499 1.16111 1.28205 0.95895 1.00360 0.91057 1.75823 1.10011 1.19196 1.13318 1.78927 0.97126 1.15628 1.14994 0.91816 0.96790 0.96943 0.74327 0.79572 0.79597 0.70737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.59 13.96 21.44 0.30 -53.29 15 2 C 0.03 1.62 5.47 84.65 0.46 2.08 15 3 Si 0.93 42.88 27.47 68.60 1.88 44.76 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 6 H -0.26 -12.06 6.54 99.48 0.65 -11.41 15 7 C -0.55 -28.22 9.83 25.60 0.25 -27.97 15 8 H 0.07 3.64 7.84 -2.91 -0.02 3.62 15 9 C 0.23 10.56 4.50 85.63 0.38 10.94 15 10 N -0.69 -23.38 5.55 -466.80 -2.59 -25.97 15 11 C 0.49 15.95 7.90 87.66 0.69 16.64 15 12 O -0.59 -25.89 16.43 -3.01 -0.05 -25.94 15 13 C 0.11 2.23 7.08 85.63 0.61 2.83 15 14 N -0.12 -3.33 3.49 -190.99 -0.67 -3.99 15 15 N -0.32 -8.42 12.13 -61.09 -0.74 -9.16 15 16 C 0.15 3.38 13.26 180.68 2.40 5.77 15 17 N -0.31 -9.03 12.50 -61.11 -0.76 -9.80 15 18 N -0.07 -2.22 13.25 37.02 0.49 -1.73 15 19 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15 20 H 0.01 0.69 7.20 -2.39 -0.02 0.67 15 21 H 0.01 0.61 7.57 -2.39 -0.02 0.59 15 22 H 0.42 11.19 8.32 -92.71 -0.77 10.41 15 23 H 0.19 2.14 8.14 -2.39 -0.02 2.12 15 24 H 0.19 2.11 8.14 -2.39 -0.02 2.09 15 25 H 0.28 3.17 8.06 -2.91 -0.02 3.15 15 Total: -1.00 -75.42 237.15 3.06 -72.36 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 0.40 Total: 2.45 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 4.79 Total: 10.31 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -3.97 Total: -103.94 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.05 Total: -25.94 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.76 kcal Total: -75.42 3.06 -72.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347487708.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.268 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds