Wall clock time and date at job start Sun Mar 29 2020 21:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34472 * 126.16605 * 2 1 4 4 C 1.30258 * 108.70247 * 179.97438 * 3 2 1 5 5 O 1.33964 * 108.75916 * 359.97438 * 4 3 2 6 6 C 1.34327 * 126.16390 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.44595 * 359.97438 * 6 2 1 8 8 N 1.46900 * 109.47045 * 90.01716 * 7 6 2 9 9 C 1.46902 * 111.00149 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.46965 * 325.00215 * 9 8 7 11 11 C 1.53009 * 109.46744 * 84.99991 * 9 8 7 12 12 C 1.50694 * 109.47320 * 204.99844 * 9 8 7 13 13 H 1.08004 * 120.00018 * 0.02562 * 12 9 8 14 14 C 1.37885 * 119.99937 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99664 * 180.02562 * 14 12 9 16 16 Si 1.86793 * 119.99930 * 0.02562 * 14 12 9 17 17 H 1.48494 * 109.47415 * 89.99954 * 16 14 12 18 18 H 1.48503 * 109.47009 * 210.00338 * 16 14 12 19 19 H 1.48507 * 109.47391 * 329.99890 * 16 14 12 20 20 H 1.08998 * 109.47326 * 270.02452 * 1 2 3 21 21 H 1.08994 * 109.47155 * 30.02965 * 1 2 3 22 22 H 1.09006 * 109.47022 * 150.02526 * 1 2 3 23 23 H 1.08000 * 125.61430 * 180.02562 * 4 3 2 24 24 H 1.09003 * 109.47405 * 210.01548 * 7 6 2 25 25 H 1.09000 * 109.46976 * 330.01633 * 7 6 2 26 26 H 1.00903 * 110.99765 * 303.95301 * 8 7 6 27 27 H 1.08994 * 109.47207 * 60.00371 * 11 9 8 28 28 H 1.08997 * 109.46517 * 180.02562 * 11 9 8 29 29 H 1.08997 * 109.46689 * 299.99738 * 11 9 8 30 30 H 0.97004 * 119.99260 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5734 -0.6446 0.0015 6 6 2.2997 -1.0845 0.0005 7 6 1.8493 -2.5226 0.0017 8 7 1.7028 -2.9910 -1.3829 9 6 1.2645 -4.3925 -1.4210 10 1 1.7121 -4.9359 -0.5889 11 6 -0.2602 -4.4532 -1.3086 12 6 1.6976 -5.0192 -2.7213 13 1 2.2443 -4.4349 -3.4467 14 6 1.3960 -6.3386 -2.9849 15 7 1.7745 -6.8856 -4.1194 16 14 0.4500 -7.3490 -1.7306 17 1 -1.0066 -7.2228 -1.9903 18 1 0.8507 -8.7747 -1.8397 19 1 0.7539 -6.8527 -0.3643 20 1 -0.3634 0.0004 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8903 -0.5135 23 1 4.4065 1.3435 0.0011 24 1 2.5900 -3.1350 0.5159 25 1 0.8914 -2.6029 0.5157 26 1 1.0693 -2.3995 -1.8996 27 1 -0.7078 -3.9099 -2.1407 28 1 -0.5854 -5.4932 -1.3364 29 1 -0.5734 -4.0000 -0.3681 30 1 1.5620 -7.8137 -4.3050 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461724522.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:45 Heat of formation + Delta-G solvation = 26.284417 kcal Electronic energy + Delta-G solvation = -13724.646258 eV Core-core repulsion = 11328.951494 eV Total energy + Delta-G solvation = -2395.694764 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.15835 -36.62956 -34.97591 -33.02595 -31.56579 -29.63780 -27.30265 -25.26538 -24.42066 -22.00688 -20.58664 -20.34788 -17.17812 -16.63047 -16.43829 -15.29661 -15.03949 -14.25907 -13.87988 -13.50733 -13.21981 -13.02372 -12.69364 -12.37506 -12.15192 -11.97502 -11.54815 -11.09625 -10.88470 -10.65118 -10.32623 -10.18846 -9.60007 -9.25128 -8.63364 -8.52726 -7.60478 -6.08390 -4.06712 1.61872 2.76931 2.95364 3.21846 3.30825 3.35129 4.24760 4.35948 4.84090 4.96788 5.12619 5.21524 5.37881 5.60797 5.63746 5.72498 5.83675 6.05776 6.09865 6.18777 6.28722 6.39700 6.46183 6.62852 7.00887 7.59658 7.76883 7.83623 8.13792 8.62330 9.03032 9.52906 11.05070 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.053470 B = 0.007434 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.532626 B = 3765.784597 C = 3999.791561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.025 4.025 3 N -0.488 5.488 4 C 0.159 3.841 5 O -0.194 6.194 6 C -0.017 4.017 7 C 0.135 3.865 8 N -0.667 5.667 9 C 0.184 3.816 10 H 0.037 0.963 11 C -0.185 4.185 12 C -0.501 4.501 13 H 0.082 0.918 14 C 0.068 3.932 15 N -0.899 5.899 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.296 1.296 19 H -0.269 1.269 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.246 0.754 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.335 0.665 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 11.010 9.937 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 N -0.218 5.218 4 C -0.068 4.068 5 O -0.079 6.079 6 C -0.071 4.071 7 C 0.006 3.994 8 N -0.298 5.298 9 C 0.075 3.925 10 H 0.055 0.945 11 C -0.244 4.244 12 C -0.540 4.540 13 H 0.100 0.900 14 C -0.134 4.134 15 N -0.537 5.537 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.223 1.223 19 H -0.195 1.195 20 H 0.089 0.911 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.262 0.738 24 H 0.105 0.895 25 H 0.075 0.925 26 H 0.153 0.847 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.946 11.262 9.755 14.929 hybrid contribution -1.112 -1.095 0.802 1.755 sum -2.058 10.168 10.557 14.801 Atomic orbital electron populations 1.20085 0.86773 1.03328 1.02499 1.21462 0.97847 0.87701 1.07556 1.70281 1.01480 1.31893 1.18161 1.27887 0.97402 0.79726 1.01779 1.84466 1.30346 1.24160 1.68916 1.23392 0.80534 0.97907 1.05225 1.20388 0.99542 0.85601 0.93918 1.60664 1.55605 1.04898 1.08596 1.19688 0.89082 0.84657 0.99031 0.94514 1.22886 1.01397 1.00989 0.99104 1.20944 1.35661 0.96072 1.01280 0.89967 1.24943 0.95768 0.97516 0.95142 1.69885 1.46895 1.13614 1.23337 0.86888 0.79907 0.79059 0.82428 1.20704 1.22325 1.19452 0.91103 0.90701 0.90779 0.73816 0.89452 0.92482 0.84702 0.92481 0.93381 0.95351 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.05 36.01 0.36 -0.48 16 2 C -0.03 -0.38 7.11 -82.81 -0.59 -0.97 16 3 N -0.49 -7.38 11.29 -11.18 -0.13 -7.50 16 4 C 0.16 2.04 13.23 52.10 0.69 2.73 16 5 O -0.19 -3.05 10.78 5.36 0.06 -2.99 16 6 C -0.02 -0.27 6.90 -35.69 -0.25 -0.51 16 7 C 0.14 2.23 5.64 -4.98 -0.03 2.20 16 8 N -0.67 -13.33 6.22 -109.22 -0.68 -14.01 16 9 C 0.18 4.18 2.17 -68.86 -0.15 4.03 16 10 H 0.04 0.86 6.86 -51.93 -0.36 0.50 16 11 C -0.18 -3.76 8.64 37.16 0.32 -3.44 16 12 C -0.50 -13.98 9.42 -34.44 -0.32 -14.30 16 13 H 0.08 2.55 8.06 -52.48 -0.42 2.12 16 14 C 0.07 1.93 5.45 -17.81 -0.10 1.84 16 15 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 16 Si 0.89 21.44 24.37 -169.99 -4.14 17.30 16 17 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 18 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.27 -6.17 6.53 56.52 0.37 -5.81 16 20 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.07 0.87 7.79 -51.93 -0.40 0.46 16 23 H 0.25 1.79 8.06 -52.49 -0.42 1.36 16 24 H 0.09 1.45 8.05 -51.93 -0.42 1.03 16 25 H 0.06 0.83 7.09 -51.93 -0.37 0.47 16 26 H 0.34 6.36 8.47 -39.29 -0.33 6.03 16 27 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 28 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 29 H 0.03 0.48 7.45 -51.93 -0.39 0.09 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 253.54 15.07 3.82 3.82 Total: -1.00 -32.02 253.54 -4.09 -36.11 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.73 Total: 2.78 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.06 Total: -8.91 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.03 Total: -48.10 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: 0.06 Total: -2.99 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.14 Total: 17.30 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.02 -4.09 -36.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461724522.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.390 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds