Wall clock time and date at job start Sun Mar 29 2020 21:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 120.00274 * 2 1 4 4 C 1.50690 * 109.47119 * 270.00041 * 3 2 1 5 5 C 1.35351 * 126.91729 * 264.95338 * 4 3 2 6 6 N 1.33769 * 106.50107 * 180.02562 * 5 4 3 7 7 N 1.28629 * 108.88659 * 359.97438 * 6 5 4 8 8 N 1.28714 * 110.17964 * 0.02562 * 7 6 5 9 9 H 0.97001 * 125.86941 * 179.73092 * 8 7 6 10 10 C 1.34776 * 120.00003 * 180.02562 * 2 1 3 11 11 O 1.21691 * 119.99724 * 180.02562 * 10 2 1 12 12 C 1.46368 * 120.00302 * 359.97438 * 10 2 1 13 13 H 1.08001 * 119.99703 * 0.02562 * 12 10 2 14 14 C 1.40046 * 120.00719 * 179.97438 * 12 10 2 15 15 N 1.30676 * 119.99708 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00437 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46894 * 90.00589 * 16 14 12 18 18 H 1.48498 * 109.47171 * 210.00394 * 16 14 12 19 19 H 1.48493 * 109.47113 * 330.00291 * 16 14 12 20 20 H 1.08997 * 109.46919 * 89.99960 * 1 2 3 21 21 H 1.08996 * 109.46814 * 210.00185 * 1 2 3 22 22 H 1.08998 * 109.46989 * 329.99973 * 1 2 3 23 23 H 1.08996 * 109.47222 * 149.99972 * 3 2 1 24 24 H 1.09008 * 109.46685 * 30.00238 * 3 2 1 25 25 H 1.08004 * 126.74797 * 0.05551 * 5 4 3 26 26 H 0.96994 * 120.00017 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4207 5 6 3.5626 1.4771 -2.1555 6 7 3.3499 2.0384 -3.3510 7 7 2.1816 2.5765 -3.3563 8 7 1.6061 2.3998 -2.2187 9 1 0.7219 2.7149 -1.9739 10 6 2.1389 -1.1672 -0.0005 11 8 3.3558 -1.1671 -0.0001 12 6 1.4071 -2.4348 -0.0005 13 1 0.3271 -2.4348 -0.0005 14 6 2.1072 -3.6477 -0.0016 15 7 3.4140 -3.6477 -0.0021 16 14 1.1732 -5.2654 -0.0023 17 1 0.9254 -5.6932 -1.4026 18 1 1.9760 -6.3008 0.6968 19 1 -0.1240 -5.0883 0.6982 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 3.1499 1.1384 0.5138 24 1 1.6084 2.0284 0.5139 25 1 4.4487 0.9469 -1.8390 26 1 3.8989 -4.4877 -0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576859035.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:10 Heat of formation + Delta-G solvation = 60.984737 kcal Electronic energy + Delta-G solvation = -13707.350719 eV Core-core repulsion = 11209.620331 eV Total energy + Delta-G solvation = -2497.730388 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.83587 -37.82407 -34.32397 -32.86880 -32.53551 -31.30403 -27.47444 -26.06925 -24.55687 -22.54872 -21.54120 -19.55492 -17.77366 -16.53989 -15.83488 -15.61059 -14.67015 -14.44550 -14.24305 -13.75516 -12.84807 -12.54657 -11.85776 -11.69912 -11.63815 -11.32281 -11.17815 -10.97993 -10.52758 -10.34269 -10.25549 -10.15884 -8.94654 -8.83992 -7.70828 -7.53150 -6.29040 -4.75502 1.93922 2.99101 3.08629 3.11795 3.16203 3.18540 4.01760 4.43709 4.47692 4.94717 5.13050 5.44202 5.65402 5.75978 5.81744 5.96649 6.17646 6.26863 6.35845 6.68171 7.17949 7.35334 7.38275 7.94965 8.17919 8.84003 8.92488 9.22992 10.44554 10.63727 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.045508 B = 0.008988 C = 0.008506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.131632 B = 3114.530240 C = 3291.102066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.644 5.644 3 C 0.193 3.807 4 C -0.011 4.011 5 C -0.028 4.028 6 N -0.274 5.274 7 N -0.101 5.101 8 N -0.393 5.393 9 H 0.441 0.559 10 C 0.555 3.445 11 O -0.569 6.569 12 C -0.542 4.542 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.763 5.763 16 Si 0.907 3.093 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.265 1.265 20 H 0.028 0.972 21 H 0.078 0.922 22 H 0.042 0.958 23 H 0.106 0.894 24 H 0.070 0.930 25 H 0.191 0.809 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.267 7.236 1.404 9.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.383 5.383 3 C 0.066 3.934 4 C -0.146 4.146 5 C -0.186 4.186 6 N -0.141 5.141 7 N -0.081 5.081 8 N -0.114 5.114 9 H 0.285 0.715 10 C 0.362 3.638 11 O -0.451 6.451 12 C -0.579 4.579 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.391 5.391 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.189 1.189 20 H 0.046 0.954 21 H 0.097 0.903 22 H 0.061 0.939 23 H 0.124 0.876 24 H 0.088 0.912 25 H 0.208 0.792 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.396 7.662 -0.043 9.371 hybrid contribution -1.133 -1.106 1.096 1.926 sum -6.530 6.556 1.052 9.312 Atomic orbital electron populations 1.21473 0.82007 1.01606 0.99563 1.48208 1.05181 1.04732 1.80154 1.19530 1.00149 0.87156 0.86553 1.23285 0.91941 1.00300 0.99055 1.23497 1.00900 1.03880 0.90297 1.75012 1.07555 1.11064 1.20508 1.78131 1.04173 1.21497 1.04321 1.45007 1.17050 1.38972 1.10332 0.71493 1.18304 0.87089 0.82049 0.76368 1.90602 1.13801 1.85892 1.54763 1.20976 0.93672 0.89112 1.54114 0.90997 1.25731 0.94657 1.00360 0.92552 1.69998 1.07047 1.27524 1.34558 0.86371 0.80143 0.81367 0.78926 1.19706 1.20339 1.18880 0.95352 0.90335 0.93905 0.87618 0.91215 0.79172 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.60 10.19 59.85 0.61 2.21 15 2 N -0.64 -13.22 2.86 -184.64 -0.53 -13.75 15 3 C 0.19 3.27 6.01 -5.19 -0.03 3.24 15 4 C -0.01 -0.18 6.89 -82.09 -0.57 -0.75 15 5 C -0.03 -0.55 11.99 -17.74 -0.21 -0.77 15 6 N -0.27 -5.49 12.41 30.24 0.38 -5.12 15 7 N -0.10 -1.82 13.38 60.35 0.81 -1.02 15 8 N -0.39 -5.92 6.98 33.54 0.23 -5.69 15 9 H 0.44 4.72 8.96 -190.40 -1.71 3.01 15 10 C 0.56 14.80 7.61 -12.99 -0.10 14.70 15 11 O -0.57 -17.07 14.60 5.20 0.08 -17.00 15 12 C -0.54 -14.57 8.74 -35.64 -0.31 -14.88 15 13 H 0.07 1.76 6.00 -52.49 -0.31 1.45 15 14 C 0.09 2.35 5.50 -17.37 -0.10 2.26 15 15 N -0.76 -22.08 11.83 55.55 0.66 -21.43 15 16 Si 0.91 19.53 29.56 -169.99 -5.02 14.51 15 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 18 H -0.28 -5.88 7.11 56.52 0.40 -5.47 15 19 H -0.26 -5.47 7.11 56.52 0.40 -5.06 15 20 H 0.03 0.45 8.14 -51.93 -0.42 0.03 15 21 H 0.08 1.36 6.09 -51.93 -0.32 1.04 15 22 H 0.04 0.53 7.89 -51.93 -0.41 0.12 15 23 H 0.11 1.94 7.42 -51.93 -0.39 1.56 15 24 H 0.07 0.88 7.89 -51.92 -0.41 0.47 15 25 H 0.19 3.72 8.06 -52.48 -0.42 3.30 15 26 H 0.27 7.12 8.29 -40.82 -0.34 6.78 15 LS Contribution 238.61 15.07 3.60 3.60 Total: -1.00 -34.02 238.61 -4.03 -38.06 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.52 Total: 1.82 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -0.71 Total: 6.02 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 1.55 Total: -47.00 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.08 Total: -17.00 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -34.02 -4.03 -38.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576859035.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.043 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds