Wall clock time and date at job start Sun Mar 29 2020 21:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 120.00274 * 2 1 4 4 C 1.50690 * 109.47119 * 270.00041 * 3 2 1 5 5 C 1.35351 * 126.91729 * 264.95338 * 4 3 2 6 6 N 1.33769 * 106.50107 * 180.02562 * 5 4 3 7 7 N 1.28629 * 108.88659 * 359.97438 * 6 5 4 8 8 N 1.28714 * 110.17964 * 0.02562 * 7 6 5 9 9 H 0.97001 * 125.86941 * 179.73092 * 8 7 6 10 10 C 1.34776 * 120.00003 * 180.02562 * 2 1 3 11 11 O 1.21691 * 119.99724 * 180.02562 * 10 2 1 12 12 C 1.46368 * 120.00302 * 359.97438 * 10 2 1 13 13 H 1.08001 * 119.99703 * 0.02562 * 12 10 2 14 14 C 1.40046 * 120.00719 * 179.97438 * 12 10 2 15 15 N 1.30676 * 119.99708 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00437 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46894 * 90.00589 * 16 14 12 18 18 H 1.48498 * 109.47171 * 210.00394 * 16 14 12 19 19 H 1.48493 * 109.47113 * 330.00291 * 16 14 12 20 20 H 1.08997 * 109.46919 * 89.99960 * 1 2 3 21 21 H 1.08996 * 109.46814 * 210.00185 * 1 2 3 22 22 H 1.08998 * 109.46989 * 329.99973 * 1 2 3 23 23 H 1.08996 * 109.47222 * 149.99972 * 3 2 1 24 24 H 1.09008 * 109.46685 * 30.00238 * 3 2 1 25 25 H 1.08004 * 126.74797 * 0.05551 * 5 4 3 26 26 H 0.96994 * 120.00017 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4207 5 6 3.5626 1.4771 -2.1555 6 7 3.3499 2.0384 -3.3510 7 7 2.1816 2.5765 -3.3563 8 7 1.6061 2.3998 -2.2187 9 1 0.7219 2.7149 -1.9739 10 6 2.1389 -1.1672 -0.0005 11 8 3.3558 -1.1671 -0.0001 12 6 1.4071 -2.4348 -0.0005 13 1 0.3271 -2.4348 -0.0005 14 6 2.1072 -3.6477 -0.0016 15 7 3.4140 -3.6477 -0.0021 16 14 1.1732 -5.2654 -0.0023 17 1 0.9254 -5.6932 -1.4026 18 1 1.9760 -6.3008 0.6968 19 1 -0.1240 -5.0883 0.6982 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 3.1499 1.1384 0.5138 24 1 1.6084 2.0284 0.5139 25 1 4.4487 0.9469 -1.8390 26 1 3.8989 -4.4877 -0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576859035.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:10 Heat of formation + Delta-G solvation = 34.373218 kcal Electronic energy + Delta-G solvation = -13708.504681 eV Core-core repulsion = 11209.620331 eV Total energy + Delta-G solvation = -2498.884350 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.26267 -39.63285 -36.09534 -34.58487 -34.29853 -32.78358 -29.13373 -27.75095 -26.17055 -23.99393 -23.03437 -21.31420 -19.23208 -18.34291 -17.62328 -17.18679 -16.21586 -16.09568 -15.89167 -15.24273 -14.42911 -14.24495 -13.46764 -13.27621 -13.13611 -13.03599 -12.78053 -12.64122 -12.21351 -12.01832 -11.88210 -11.57829 -10.92211 -10.34865 -9.71394 -9.22280 -8.27458 -6.82553 0.53238 1.40804 1.40964 1.48211 1.56122 1.86575 2.24678 2.48179 2.93323 3.50849 3.66214 3.84590 4.08822 4.37842 4.54406 4.65212 4.76783 4.89890 5.04930 5.15676 5.39065 5.72939 6.02882 6.13676 6.33499 6.90122 7.36633 7.39834 8.47832 8.68141 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.045508 B = 0.008988 C = 0.008506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.131632 B = 3114.530240 C = 3291.102066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.645 5.645 3 C 0.195 3.805 4 C -0.001 4.001 5 C -0.054 4.054 6 N -0.301 5.301 7 N -0.103 5.103 8 N -0.363 5.363 9 H 0.463 0.537 10 C 0.540 3.460 11 O -0.617 6.617 12 C -0.569 4.569 13 H 0.092 0.908 14 C 0.031 3.969 15 N -0.818 5.818 16 Si 0.989 3.011 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.246 1.246 20 H 0.035 0.965 21 H 0.066 0.934 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.127 0.873 25 H 0.177 0.823 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 7.749 1.870 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.382 5.382 3 C 0.069 3.931 4 C -0.137 4.137 5 C -0.212 4.212 6 N -0.169 5.169 7 N -0.083 5.083 8 N -0.088 5.088 9 H 0.313 0.687 10 C 0.346 3.654 11 O -0.502 6.502 12 C -0.606 4.606 13 H 0.110 0.890 14 C -0.185 4.185 15 N -0.448 5.448 16 Si 0.809 3.191 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.169 1.169 20 H 0.053 0.947 21 H 0.085 0.915 22 H 0.112 0.888 23 H 0.103 0.897 24 H 0.145 0.855 25 H 0.195 0.805 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.189 8.238 0.423 11.623 hybrid contribution -0.339 -1.140 0.953 1.524 sum -8.528 7.098 1.377 11.180 Atomic orbital electron populations 1.21694 0.79104 1.03608 1.00589 1.47961 1.07058 1.04351 1.78782 1.19728 1.00089 0.86910 0.86418 1.23158 0.91482 0.99950 0.99118 1.23525 1.01830 1.04813 0.91001 1.74992 1.08644 1.12171 1.21044 1.78043 1.03765 1.21295 1.05201 1.44915 1.17512 1.37385 1.08970 0.68745 1.18589 0.86755 0.84076 0.75974 1.90565 1.15847 1.87256 1.56568 1.21538 0.94878 0.89960 1.54188 0.89032 1.26902 0.95449 1.04748 0.91389 1.70167 1.09350 1.28805 1.36450 0.85136 0.79094 0.75744 0.79108 1.19307 1.19967 1.16885 0.94674 0.91548 0.88781 0.89680 0.85487 0.80538 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.69 10.19 127.77 1.30 4.00 15 2 N -0.65 -25.29 2.86 -856.29 -2.45 -27.73 15 3 C 0.19 6.15 6.01 85.63 0.52 6.66 15 4 C 0.00 -0.03 6.89 41.35 0.28 0.26 15 5 C -0.05 -2.13 11.99 83.73 1.00 -1.12 15 6 N -0.30 -12.05 12.41 -58.25 -0.72 -12.77 15 7 N -0.10 -3.53 13.38 37.02 0.50 -3.04 15 8 N -0.36 -9.93 6.98 -47.79 -0.33 -10.26 15 9 H 0.46 7.93 8.96 -219.96 -1.97 5.95 15 10 C 0.54 28.98 7.61 86.36 0.66 29.64 15 11 O -0.62 -38.28 14.60 -4.32 -0.06 -38.34 15 12 C -0.57 -30.49 8.74 24.83 0.22 -30.27 15 13 H 0.09 4.36 6.00 -2.91 -0.02 4.34 15 14 C 0.03 1.65 5.50 85.30 0.47 2.12 15 15 N -0.82 -48.73 11.83 21.84 0.26 -48.48 15 16 Si 0.99 39.83 29.56 68.60 2.03 41.86 15 17 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 18 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 19 H -0.25 -9.04 7.11 99.48 0.71 -8.33 15 20 H 0.03 0.98 8.14 -2.39 -0.02 0.96 15 21 H 0.07 2.11 6.09 -2.39 -0.01 2.09 15 22 H 0.09 1.79 7.89 -2.39 -0.02 1.77 15 23 H 0.08 3.10 7.42 -2.39 -0.02 3.08 15 24 H 0.13 2.57 7.89 -2.38 -0.02 2.56 15 25 H 0.18 7.34 8.06 -2.91 -0.02 7.32 15 26 H 0.27 14.86 8.29 -92.71 -0.77 14.09 15 Total: -1.00 -76.47 238.61 2.92 -73.56 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -0.75 Total: 13.93 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 4.45 Total: 11.28 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -2.75 Total: -102.28 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.06 Total: -38.34 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -76.47 2.92 -73.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576859035.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.930 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds