Wall clock time and date at job start Sun Mar 29 2020 21:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 120.00163 * 2 1 4 4 H 1.48504 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46992 * 300.00156 * 3 2 1 6 6 H 1.48499 * 109.46871 * 60.00057 * 3 2 1 7 7 C 1.40049 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00597 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00141 * 359.97438 * 7 2 1 10 10 O 1.21696 * 119.99645 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00678 * 180.02562 * 9 7 2 12 12 C 1.47359 * 125.56814 * 359.97438 * 11 9 7 13 13 C 1.54832 * 104.79213 * 154.84166 * 12 11 9 14 14 C 1.54937 * 101.89145 * 37.10452 * 13 12 11 15 15 H 1.08999 * 112.82771 * 87.57421 * 14 13 12 16 16 C 1.53796 * 108.80519 * 214.20687 * 14 13 12 17 17 N 1.47854 * 107.12234 * 113.26099 * 16 14 13 18 18 C 1.48412 * 105.78253 * 333.39995 * 17 16 14 19 19 C 1.46850 * 125.57782 * 180.02562 * 11 9 7 20 20 H 1.09005 * 112.02224 * 59.31871 * 19 11 9 21 21 H 0.96995 * 119.99870 * 359.97438 * 1 2 3 22 22 H 1.08995 * 110.37621 * 36.01797 * 12 11 9 23 23 H 1.09003 * 110.37906 * 273.67218 * 12 11 9 24 24 H 1.08998 * 110.94631 * 278.95182 * 13 12 11 25 25 H 1.09000 * 110.97734 * 155.26061 * 13 12 11 26 26 H 1.08997 * 109.90335 * 232.63724 * 16 14 13 27 27 H 1.09001 * 109.90386 * 353.70253 * 16 14 13 28 28 H 1.00903 * 111.00295 * 93.89368 * 17 16 14 29 29 H 1.09004 * 110.58923 * 280.53735 * 18 17 16 30 30 H 1.09003 * 110.58628 * 157.62515 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6478 -0.0005 12 6 3.4156 -3.7909 -0.0011 13 6 3.6777 -5.1777 0.6355 14 6 2.5030 -6.0154 0.0708 15 1 2.7312 -6.4664 -0.8949 16 6 2.0686 -7.0393 1.1330 17 7 0.7076 -6.6621 1.5703 18 6 0.6009 -5.1996 1.3415 19 6 1.3417 -4.9848 -0.0011 20 1 0.7035 -5.1436 -0.8704 21 1 -0.4850 0.8400 0.0004 22 1 3.8738 -3.0051 0.5994 23 1 3.7993 -3.7628 -1.0209 24 1 3.6295 -5.1226 1.7231 25 1 4.6362 -5.5817 0.3098 26 1 2.0557 -8.0398 0.7005 27 1 2.7549 -7.0099 1.9793 28 1 0.0069 -7.1625 1.0441 29 1 1.0929 -4.6493 2.1435 30 1 -0.4437 -4.9004 1.2548 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580044431.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:49 Heat of formation + Delta-G solvation = -28.325145 kcal Electronic energy + Delta-G solvation = -14308.197842 eV Core-core repulsion = 11910.135030 eV Total energy + Delta-G solvation = -2398.062812 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.66374 -36.49210 -34.23190 -32.53027 -30.69144 -28.23330 -26.94543 -25.74951 -22.20159 -21.36780 -20.09793 -18.54873 -17.08449 -16.06309 -15.50848 -14.90620 -14.35761 -13.90748 -13.31292 -13.00493 -12.68842 -12.33096 -12.18733 -11.72975 -11.50429 -11.26102 -10.99858 -10.88016 -10.54146 -10.42783 -10.29423 -10.18879 -9.99294 -8.88872 -8.48106 -7.63997 -7.16828 -6.21793 -4.66170 3.11416 3.19580 3.23979 4.05375 4.39931 4.53477 4.67168 4.87191 4.99444 5.24891 5.51149 5.60102 5.71066 5.75385 5.85477 5.97981 6.01559 6.14137 6.27512 6.39796 6.57819 6.63280 6.75442 6.96039 7.38818 7.42165 7.60985 8.10051 8.40719 9.00255 9.47997 10.55797 10.74747 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.054392 B = 0.009316 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.658602 B = 3004.942651 C = 3366.370698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.086 3.914 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.571 3.429 10 O -0.574 6.574 11 N -0.638 5.638 12 C 0.118 3.882 13 C -0.125 4.125 14 C -0.136 4.136 15 H 0.086 0.914 16 C 0.052 3.948 17 N -0.678 5.678 18 C 0.044 3.956 19 C 0.117 3.883 20 H 0.067 0.933 21 H 0.268 0.732 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.332 0.668 29 H 0.081 0.919 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 -9.110 0.485 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.377 3.623 10 O -0.456 6.456 11 N -0.378 5.378 12 C -0.006 4.006 13 C -0.164 4.164 14 C -0.156 4.156 15 H 0.105 0.895 16 C -0.078 4.078 17 N -0.304 5.304 18 C -0.086 4.086 19 C 0.010 3.990 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.099 0.901 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.908 -8.886 1.233 10.742 hybrid contribution 0.510 0.875 -1.114 1.506 sum 6.418 -8.011 0.118 10.266 Atomic orbital electron populations 1.70027 1.07046 1.27223 1.35303 1.25732 0.94643 1.00322 0.92628 0.86312 0.80494 0.81710 0.78250 1.18753 1.20143 1.20103 1.20926 0.93612 0.88968 1.54036 0.91232 1.18059 0.86732 0.81202 0.76276 1.90608 1.13817 1.85875 1.55325 1.48687 1.04705 1.04002 1.80364 1.21913 0.84053 0.95752 0.98924 1.22857 0.97141 0.95831 1.00549 1.23380 0.96672 0.96392 0.99141 0.89531 1.22710 0.91737 0.97026 0.96354 1.62779 1.03619 1.06101 1.57940 1.23392 1.01635 0.86992 0.96595 1.22672 0.93946 0.84913 0.97436 0.91501 0.92119 0.91083 0.93663 0.90918 0.91141 0.92122 0.90538 0.85342 0.90106 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.04 11.83 55.55 0.66 -22.39 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 20.19 29.56 -169.99 -5.02 15.17 16 4 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -15.30 8.98 -35.63 -0.32 -15.62 16 8 H 0.07 1.82 6.61 -52.49 -0.35 1.48 16 9 C 0.57 16.43 7.58 -12.99 -0.10 16.33 16 10 O -0.57 -18.61 15.04 5.19 0.08 -18.53 16 11 N -0.64 -14.76 2.96 -163.12 -0.48 -15.24 16 12 C 0.12 2.20 6.54 -2.61 -0.02 2.18 16 13 C -0.13 -1.84 6.33 -24.74 -0.16 -1.99 16 14 C -0.14 -2.01 4.00 -87.89 -0.35 -2.36 16 15 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 16 C 0.05 0.69 7.07 -2.88 -0.02 0.67 16 17 N -0.68 -10.44 7.51 -110.39 -0.83 -11.27 16 18 C 0.04 0.85 6.58 -2.02 -0.01 0.84 16 19 C 0.12 2.30 3.86 -65.48 -0.25 2.05 16 20 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 21 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 22 H 0.07 1.35 7.08 -51.93 -0.37 0.99 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.07 1.09 7.53 -51.93 -0.39 0.69 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.00 7.30 -51.93 -0.38 0.62 16 28 H 0.33 4.52 8.92 -39.29 -0.35 4.17 16 29 H 0.08 1.72 8.09 -51.93 -0.42 1.30 16 30 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 247.34 15.07 3.73 3.73 Total: -1.00 -33.29 247.34 -7.13 -40.41 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -3.93 Total: 3.69 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.33 Total: 4.43 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.66 Total: -48.90 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.08 Total: -18.53 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.29 -7.13 -40.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580044431.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.089 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds