Wall clock time and date at job start Sun Mar 29 2020 21:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 120.00163 * 2 1 4 4 H 1.48504 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46992 * 300.00156 * 3 2 1 6 6 H 1.48499 * 109.46871 * 60.00057 * 3 2 1 7 7 C 1.40049 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00597 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00141 * 359.97438 * 7 2 1 10 10 O 1.21696 * 119.99645 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00678 * 180.02562 * 9 7 2 12 12 C 1.47359 * 125.56814 * 359.97438 * 11 9 7 13 13 C 1.54832 * 104.79213 * 154.84166 * 12 11 9 14 14 C 1.54937 * 101.89145 * 37.10452 * 13 12 11 15 15 H 1.08999 * 112.82771 * 87.57421 * 14 13 12 16 16 C 1.53796 * 108.80519 * 214.20687 * 14 13 12 17 17 N 1.47854 * 107.12234 * 113.26099 * 16 14 13 18 18 C 1.48412 * 105.78253 * 333.39995 * 17 16 14 19 19 C 1.46850 * 125.57782 * 180.02562 * 11 9 7 20 20 H 1.09005 * 112.02224 * 59.31871 * 19 11 9 21 21 H 0.96995 * 119.99870 * 359.97438 * 1 2 3 22 22 H 1.08995 * 110.37621 * 36.01797 * 12 11 9 23 23 H 1.09003 * 110.37906 * 273.67218 * 12 11 9 24 24 H 1.08998 * 110.94631 * 278.95182 * 13 12 11 25 25 H 1.09000 * 110.97734 * 155.26061 * 13 12 11 26 26 H 1.08997 * 109.90335 * 232.63724 * 16 14 13 27 27 H 1.09001 * 109.90386 * 353.70253 * 16 14 13 28 28 H 1.00903 * 111.00295 * 93.89368 * 17 16 14 29 29 H 1.09004 * 110.58923 * 280.53735 * 18 17 16 30 30 H 1.09003 * 110.58628 * 157.62515 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6478 -0.0005 12 6 3.4156 -3.7909 -0.0011 13 6 3.6777 -5.1777 0.6355 14 6 2.5030 -6.0154 0.0708 15 1 2.7312 -6.4664 -0.8949 16 6 2.0686 -7.0393 1.1330 17 7 0.7076 -6.6621 1.5703 18 6 0.6009 -5.1996 1.3415 19 6 1.3417 -4.9848 -0.0011 20 1 0.7035 -5.1436 -0.8704 21 1 -0.4850 0.8400 0.0004 22 1 3.8738 -3.0051 0.5994 23 1 3.7993 -3.7628 -1.0209 24 1 3.6295 -5.1226 1.7231 25 1 4.6362 -5.5817 0.3098 26 1 2.0557 -8.0398 0.7005 27 1 2.7549 -7.0099 1.9793 28 1 0.0069 -7.1625 1.0441 29 1 1.0929 -4.6493 2.1435 30 1 -0.4437 -4.9004 1.2548 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580044431.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:49 Heat of formation + Delta-G solvation = -54.638497 kcal Electronic energy + Delta-G solvation = -14309.338875 eV Core-core repulsion = 11910.135030 eV Total energy + Delta-G solvation = -2399.203845 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.17167 -38.47388 -35.84132 -34.67908 -32.25153 -29.87539 -28.43720 -27.65468 -23.87481 -22.71671 -21.70794 -20.18129 -18.80136 -17.84757 -17.35952 -16.44321 -16.13548 -15.59709 -14.88913 -14.41520 -14.14662 -14.03440 -13.94051 -13.25350 -13.14581 -12.91704 -12.74574 -12.59900 -12.49906 -11.97911 -11.70924 -11.65168 -11.39192 -10.97712 -9.92286 -9.78683 -9.00916 -8.32489 -6.87732 1.37202 1.37460 1.55482 2.20745 2.42599 2.76689 3.32642 3.49207 3.57110 3.68898 4.10852 4.17603 4.25329 4.37505 4.47814 4.67307 4.72156 4.88987 4.93335 5.06769 5.11210 5.20238 5.30472 5.37198 5.56323 5.71480 6.03614 6.41268 6.42591 6.83967 7.46344 8.43958 8.64457 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.054392 B = 0.009316 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.658602 B = 3004.942651 C = 3366.370698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.246 1.246 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.552 3.448 10 O -0.628 6.628 11 N -0.645 5.645 12 C 0.108 3.892 13 C -0.111 4.111 14 C -0.119 4.119 15 H 0.113 0.887 16 C 0.054 3.946 17 N -0.674 5.674 18 C 0.055 3.945 19 C 0.102 3.898 20 H 0.048 0.952 21 H 0.274 0.726 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.344 0.656 29 H 0.056 0.944 30 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.462 -10.170 0.401 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.169 1.169 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.602 4.602 8 H 0.104 0.896 9 C 0.358 3.642 10 O -0.515 6.515 11 N -0.383 5.383 12 C -0.016 4.016 13 C -0.149 4.149 14 C -0.139 4.139 15 H 0.131 0.869 16 C -0.075 4.075 17 N -0.302 5.302 18 C -0.076 4.076 19 C -0.005 4.005 20 H 0.066 0.934 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.132 0.868 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.160 0.840 29 H 0.074 0.926 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.727 -10.014 1.149 13.333 hybrid contribution -0.366 1.113 -1.098 1.606 sum 8.361 -8.901 0.050 12.212 Atomic orbital electron populations 1.70197 1.09528 1.28895 1.36502 1.27014 0.95565 1.04985 0.91231 0.84971 0.79372 0.75336 0.78627 1.16920 1.19234 1.19246 1.21423 0.94557 0.89720 1.54491 0.89604 1.18417 0.86425 0.83248 0.76095 1.90550 1.16011 1.87303 1.57644 1.48487 1.07008 1.04029 1.78752 1.22204 0.81040 0.98350 0.99971 1.22844 0.99043 0.92852 1.00114 1.23400 0.94234 0.95165 1.01071 0.86905 1.22841 0.90112 0.98212 0.96340 1.62712 1.05605 1.03317 1.58521 1.23014 0.99226 0.89567 0.95747 1.22924 0.96045 0.84818 0.96670 0.93440 0.91561 0.91983 0.92547 0.91195 0.86760 0.88425 0.89585 0.84000 0.92568 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.26 11.83 21.84 0.26 -51.00 16 2 C 0.03 1.53 5.50 85.30 0.47 2.00 16 3 Si 1.00 41.60 29.56 68.60 2.03 43.63 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.57 -32.87 8.98 24.83 0.22 -32.65 16 8 H 0.09 4.52 6.61 -2.91 -0.02 4.50 16 9 C 0.55 33.18 7.58 86.36 0.66 33.83 16 10 O -0.63 -43.26 15.04 -4.34 -0.07 -43.33 16 11 N -0.65 -30.48 2.96 -788.22 -2.33 -32.81 16 12 C 0.11 3.86 6.54 86.84 0.57 4.43 16 13 C -0.11 -2.84 6.33 31.88 0.20 -2.64 16 14 C -0.12 -3.13 4.00 -9.03 -0.04 -3.17 16 15 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 16 C 0.05 1.24 7.07 86.39 0.61 1.85 16 17 N -0.67 -19.78 7.51 -503.15 -3.78 -23.57 16 18 C 0.06 2.21 6.58 86.64 0.57 2.78 16 19 C 0.10 4.04 3.86 46.39 0.18 4.21 16 20 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 21 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 22 H 0.06 2.32 7.08 -2.39 -0.02 2.30 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.07 1.87 7.53 -2.39 -0.02 1.85 16 25 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.86 7.30 -2.39 -0.02 1.85 16 28 H 0.34 8.83 8.92 -89.69 -0.80 8.03 16 29 H 0.06 2.50 8.09 -2.39 -0.02 2.48 16 30 H 0.04 2.04 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -77.42 247.34 -0.11 -77.53 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.34 Total: 18.90 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 3.44 Total: 10.65 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -5.86 Total: -107.38 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.07 Total: -43.33 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -77.42 -0.11 -77.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580044431.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.887 kcal (2) G-P(sol) polarization free energy of solvation -77.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds