Wall clock time and date at job start Sun Mar 29 2020 21:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86796 * 120.00128 * 2 1 4 4 H 1.48503 * 109.47342 * 240.00167 * 3 2 1 5 5 H 1.48507 * 109.47152 * 120.00338 * 3 2 1 6 6 H 1.48495 * 109.47100 * 0.02562 * 3 2 1 7 7 C 1.40048 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00216 * 355.04267 * 7 2 1 9 9 C 1.46376 * 119.99998 * 175.03407 * 7 2 1 10 10 O 1.21695 * 119.99730 * 6.35862 * 9 7 2 11 11 N 1.34780 * 120.00262 * 186.34692 * 9 7 2 12 12 C 1.47226 * 136.44458 * 359.64646 * 11 9 7 13 13 C 1.54292 * 87.55882 * 151.78918 * 12 11 9 14 14 H 1.09002 * 114.79341 * 140.43981 * 13 12 11 15 15 C 1.51754 * 112.55743 * 271.72668 * 13 12 11 16 16 C 1.51678 * 113.42061 * 124.66505 * 15 13 12 17 17 N 1.46402 * 111.36447 * 312.64391 * 16 15 13 18 18 C 1.46944 * 110.49712 * 65.34563 * 17 16 15 19 19 C 1.46598 * 136.44708 * 180.02562 * 11 9 7 20 20 H 1.09000 * 112.82720 * 95.34368 * 19 11 9 21 21 H 0.96995 * 120.00056 * 185.08572 * 1 2 3 22 22 H 1.09002 * 113.51185 * 266.42266 * 12 11 9 23 23 H 1.09000 * 113.51930 * 37.02106 * 12 11 9 24 24 H 1.09011 * 108.69071 * 3.64965 * 15 13 12 25 25 H 1.08993 * 108.69183 * 245.68876 * 15 13 12 26 26 H 1.08998 * 109.10347 * 192.15837 * 16 15 13 27 27 H 1.09000 * 109.04828 * 73.09504 * 16 15 13 28 28 H 1.00896 * 110.99465 * 188.94170 * 17 16 15 29 29 H 1.09005 * 109.48687 * 175.67490 * 18 17 16 30 30 H 1.09004 * 109.49396 * 55.60279 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 3.0946 1.6963 1.2125 6 1 1.2758 2.7464 0.0006 7 6 2.0069 -1.2129 -0.0005 8 1 1.4699 -2.1465 0.0799 9 6 3.4666 -1.2153 -0.1103 10 8 4.0803 -0.1648 -0.0845 11 7 4.1308 -2.3809 -0.2397 12 6 3.7776 -3.8087 -0.3043 13 6 5.0493 -4.0171 -1.1528 14 1 5.6024 -4.9298 -0.9309 15 6 4.7983 -3.8188 -2.6362 16 6 5.7123 -2.7873 -3.2697 17 7 5.7742 -1.5647 -2.4666 18 6 6.4036 -1.8345 -1.1665 19 6 5.5301 -2.7972 -0.3727 20 1 5.9810 -3.0749 0.5801 21 1 -0.4850 -0.8367 0.0745 22 1 3.8135 -4.3097 0.6631 23 1 2.8531 -4.0039 -0.8476 24 1 3.7645 -3.5027 -2.7764 25 1 4.9414 -4.7719 -3.1451 26 1 5.3387 -2.5423 -4.2640 27 1 6.7144 -3.2067 -3.3587 28 1 6.2627 -0.8326 -2.9599 29 1 6.5111 -0.9011 -0.6139 30 1 7.3861 -2.2799 -1.3234 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580046012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:36 Heat of formation + Delta-G solvation = -7.270888 kcal Electronic energy + Delta-G solvation = -14554.584031 eV Core-core repulsion = 12157.434200 eV Total energy + Delta-G solvation = -2397.149831 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.25607 -36.62731 -35.01671 -32.75050 -31.22745 -28.87567 -26.22456 -25.61346 -22.98398 -21.65979 -19.87518 -17.98613 -17.16614 -16.48572 -15.30338 -14.95185 -14.76818 -13.71158 -13.66448 -13.46330 -12.66427 -12.58974 -12.36747 -12.04257 -11.88091 -11.64514 -10.89916 -10.75987 -10.32056 -10.15865 -10.06968 -9.74522 -9.09546 -8.81608 -7.96234 -7.77792 -7.42446 -6.86223 -4.78147 3.70934 3.74776 4.01673 4.29381 4.46593 4.51668 4.67842 4.71857 5.05116 5.37330 5.50909 5.51907 5.59047 5.64459 5.74353 5.82742 5.91377 6.05303 6.14848 6.17374 6.33481 6.46491 6.64873 6.69858 7.43581 7.77217 7.83845 7.89086 8.33030 8.96951 9.39810 10.24540 10.45127 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.040318 B = 0.012061 C = 0.010870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.307469 B = 2321.050056 C = 2575.171845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.060 3.940 3 Si 1.135 2.865 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.327 1.327 7 C -0.592 4.592 8 H 0.065 0.935 9 C 0.595 3.405 10 O -0.606 6.606 11 N -0.634 5.634 12 C 0.113 3.887 13 C -0.126 4.126 14 H 0.079 0.921 15 C -0.091 4.091 16 C 0.067 3.933 17 N -0.667 5.667 18 C 0.063 3.937 19 C 0.137 3.863 20 H 0.070 0.930 21 H 0.275 0.725 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.017 0.983 28 H 0.340 0.660 29 H 0.085 0.915 30 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.550 -8.583 -4.126 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.156 4.156 3 Si 0.969 3.031 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.259 1.259 7 C -0.628 4.628 8 H 0.084 0.916 9 C 0.407 3.593 10 O -0.498 6.498 11 N -0.370 5.370 12 C -0.012 4.012 13 C -0.146 4.146 14 H 0.097 0.903 15 C -0.129 4.129 16 C -0.063 4.063 17 N -0.298 5.298 18 C -0.067 4.067 19 C 0.031 3.969 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.035 0.965 28 H 0.157 0.843 29 H 0.103 0.897 30 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 9.824 -6.353 -3.919 12.338 hybrid contribution 0.965 -2.253 -0.066 2.452 sum 10.789 -8.607 -3.984 14.365 Atomic orbital electron populations 1.70668 1.07569 1.31746 1.36779 1.27146 0.95309 1.04893 0.88264 0.82282 0.71130 0.70598 0.79120 1.21136 1.21854 1.25945 1.21950 0.89814 0.96015 1.55042 0.91634 1.17896 0.87778 0.79257 0.74405 1.90055 1.69347 1.29451 1.60911 1.49139 1.05253 1.04582 1.78055 1.22902 0.97027 0.83666 0.97605 1.22614 0.98645 0.97823 0.95479 0.90254 1.20720 1.01360 0.97556 0.93297 1.21430 0.97146 0.91121 0.96561 1.59945 1.57987 1.07868 1.03993 1.21804 0.93339 1.00272 0.91247 1.21909 0.86991 0.91952 0.96050 0.91204 0.91446 0.91952 0.91364 0.90980 0.92173 0.91332 0.96455 0.84256 0.89655 0.95595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.24 13.64 55.55 0.76 -24.48 16 2 C 0.06 1.81 5.52 -17.37 -0.10 1.72 16 3 Si 1.13 31.36 25.82 -169.99 -4.39 26.97 16 4 H -0.28 -8.03 6.99 56.52 0.39 -7.64 16 5 H -0.29 -8.13 7.10 56.52 0.40 -7.72 16 6 H -0.33 -8.69 7.11 56.52 0.40 -8.29 16 7 C -0.59 -17.62 9.81 -35.63 -0.35 -17.97 16 8 H 0.07 1.95 8.00 -52.49 -0.42 1.53 16 9 C 0.60 16.70 7.78 -12.99 -0.10 16.60 16 10 O -0.61 -18.01 11.98 5.19 0.06 -17.94 16 11 N -0.63 -14.42 3.30 -186.57 -0.62 -15.03 16 12 C 0.11 2.03 7.77 -10.74 -0.08 1.95 16 13 C -0.13 -1.91 4.57 -90.80 -0.41 -2.32 16 14 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.09 -1.35 5.74 -28.03 -0.16 -1.51 16 16 C 0.07 0.97 6.45 -4.76 -0.03 0.94 16 17 N -0.67 -11.81 6.71 -115.25 -0.77 -12.58 16 18 C 0.06 1.10 5.92 -4.15 -0.02 1.07 16 19 C 0.14 2.46 4.24 -76.22 -0.32 2.13 16 20 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 21 H 0.27 7.96 8.72 -40.82 -0.36 7.60 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.07 1.27 7.81 -51.93 -0.41 0.86 16 24 H 0.07 1.26 7.48 -51.92 -0.39 0.87 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.02 0.22 8.06 -51.93 -0.42 -0.20 16 28 H 0.34 5.35 8.90 -39.29 -0.35 5.00 16 29 H 0.09 1.67 7.73 -51.93 -0.40 1.27 16 30 H 0.03 0.37 8.07 -51.93 -0.42 -0.05 16 LS Contribution 245.91 15.07 3.71 3.71 Total: -1.00 -33.95 245.91 -6.91 -40.86 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -4.07 Total: -4.12 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.58 Total: 2.62 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.63 Total: -52.09 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.06 Total: -17.94 kcal Atomic # 14 Polarization: 31.36 SS G_CDS: -4.39 Total: 26.97 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.95 -6.91 -40.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580046012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.591 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds