Wall clock time and date at job start Sun Mar 29 2020 21:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86796 * 120.00128 * 2 1 4 4 H 1.48503 * 109.47342 * 240.00167 * 3 2 1 5 5 H 1.48507 * 109.47152 * 120.00338 * 3 2 1 6 6 H 1.48495 * 109.47100 * 0.02562 * 3 2 1 7 7 C 1.40048 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00216 * 355.04267 * 7 2 1 9 9 C 1.46376 * 119.99998 * 175.03407 * 7 2 1 10 10 O 1.21695 * 119.99730 * 6.35862 * 9 7 2 11 11 N 1.34780 * 120.00262 * 186.34692 * 9 7 2 12 12 C 1.47226 * 136.44458 * 359.64646 * 11 9 7 13 13 C 1.54292 * 87.55882 * 151.78918 * 12 11 9 14 14 H 1.09002 * 114.79341 * 140.43981 * 13 12 11 15 15 C 1.51754 * 112.55743 * 271.72668 * 13 12 11 16 16 C 1.51678 * 113.42061 * 124.66505 * 15 13 12 17 17 N 1.46402 * 111.36447 * 312.64391 * 16 15 13 18 18 C 1.46944 * 110.49712 * 65.34563 * 17 16 15 19 19 C 1.46598 * 136.44708 * 180.02562 * 11 9 7 20 20 H 1.09000 * 112.82720 * 95.34368 * 19 11 9 21 21 H 0.96995 * 120.00056 * 185.08572 * 1 2 3 22 22 H 1.09002 * 113.51185 * 266.42266 * 12 11 9 23 23 H 1.09000 * 113.51930 * 37.02106 * 12 11 9 24 24 H 1.09011 * 108.69071 * 3.64965 * 15 13 12 25 25 H 1.08993 * 108.69183 * 245.68876 * 15 13 12 26 26 H 1.08998 * 109.10347 * 192.15837 * 16 15 13 27 27 H 1.09000 * 109.04828 * 73.09504 * 16 15 13 28 28 H 1.00896 * 110.99465 * 188.94170 * 17 16 15 29 29 H 1.09005 * 109.48687 * 175.67490 * 18 17 16 30 30 H 1.09004 * 109.49396 * 55.60279 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 3.0946 1.6963 1.2125 6 1 1.2758 2.7464 0.0006 7 6 2.0069 -1.2129 -0.0005 8 1 1.4699 -2.1465 0.0799 9 6 3.4666 -1.2153 -0.1103 10 8 4.0803 -0.1648 -0.0845 11 7 4.1308 -2.3809 -0.2397 12 6 3.7776 -3.8087 -0.3043 13 6 5.0493 -4.0171 -1.1528 14 1 5.6024 -4.9298 -0.9309 15 6 4.7983 -3.8188 -2.6362 16 6 5.7123 -2.7873 -3.2697 17 7 5.7742 -1.5647 -2.4666 18 6 6.4036 -1.8345 -1.1665 19 6 5.5301 -2.7972 -0.3727 20 1 5.9810 -3.0749 0.5801 21 1 -0.4850 -0.8367 0.0745 22 1 3.8135 -4.3097 0.6631 23 1 2.8531 -4.0039 -0.8476 24 1 3.7645 -3.5027 -2.7764 25 1 4.9414 -4.7719 -3.1451 26 1 5.3387 -2.5423 -4.2640 27 1 6.7144 -3.2067 -3.3587 28 1 6.2627 -0.8326 -2.9599 29 1 6.5111 -0.9011 -0.6139 30 1 7.3861 -2.2799 -1.3234 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580046012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:36 Heat of formation + Delta-G solvation = -34.220554 kcal Electronic energy + Delta-G solvation = -14555.752657 eV Core-core repulsion = 12157.434200 eV Total energy + Delta-G solvation = -2398.318456 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.71876 -38.65220 -36.43520 -35.04294 -32.52647 -30.57294 -27.93370 -27.40440 -24.40379 -22.99566 -21.64734 -19.96904 -18.68619 -17.92481 -17.17137 -16.68492 -16.25950 -15.64396 -15.15843 -14.96853 -14.60702 -14.32884 -14.02338 -13.64858 -13.23654 -13.17252 -12.51452 -12.48633 -12.18723 -11.93873 -11.45450 -11.33763 -11.14827 -11.03898 -9.96316 -9.26828 -9.19998 -9.08046 -7.08411 1.47044 1.52538 1.95254 2.27703 2.35163 2.65144 3.23524 3.33817 3.44983 3.86472 4.12456 4.22017 4.37864 4.48390 4.50808 4.55846 4.58981 4.75935 4.88444 4.90518 5.03043 5.09341 5.28527 5.47486 5.50405 5.72046 6.11642 6.29263 6.57381 6.67570 7.45080 8.10997 8.13580 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.040318 B = 0.012061 C = 0.010870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.307469 B = 2321.050056 C = 2575.171845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.028 3.972 3 Si 1.172 2.828 4 H -0.298 1.298 5 H -0.299 1.299 6 H -0.311 1.311 7 C -0.613 4.613 8 H 0.053 0.947 9 C 0.591 3.409 10 O -0.630 6.630 11 N -0.652 5.652 12 C 0.103 3.897 13 C -0.097 4.097 14 H 0.131 0.869 15 C -0.096 4.096 16 C 0.067 3.933 17 N -0.704 5.704 18 C 0.066 3.934 19 C 0.124 3.876 20 H 0.092 0.908 21 H 0.274 0.726 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.034 0.966 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.345 0.655 29 H 0.051 0.949 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.557 -10.469 -4.642 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.185 4.185 3 Si 1.005 2.995 4 H -0.226 1.226 5 H -0.227 1.227 6 H -0.242 1.242 7 C -0.650 4.650 8 H 0.071 0.929 9 C 0.399 3.601 10 O -0.524 6.524 11 N -0.386 5.386 12 C -0.021 4.021 13 C -0.116 4.116 14 H 0.148 0.852 15 C -0.133 4.133 16 C -0.062 4.062 17 N -0.336 5.336 18 C -0.064 4.064 19 C 0.020 3.980 20 H 0.109 0.891 21 H 0.084 0.916 22 H 0.104 0.896 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.118 0.882 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.164 0.836 29 H 0.070 0.930 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.835 -8.296 -4.441 15.120 hybrid contribution 0.406 -1.793 0.081 1.840 sum 12.240 -10.089 -4.361 16.451 Atomic orbital electron populations 1.70676 1.07744 1.31765 1.38199 1.27834 0.95703 1.06745 0.88239 0.81762 0.70262 0.69539 0.77938 1.22649 1.22691 1.24225 1.22118 0.91543 0.95485 1.55854 0.92862 1.17629 0.87446 0.80700 0.74280 1.90016 1.69752 1.30978 1.61693 1.49061 1.08419 1.05064 1.76056 1.23269 0.98313 0.80936 0.99547 1.22570 0.96146 0.98220 0.94657 0.85169 1.20832 0.99227 0.99539 0.93739 1.21496 0.98684 0.89921 0.96138 1.59928 1.59053 1.09785 1.04847 1.21731 0.95042 0.98846 0.90773 1.22389 0.84581 0.93132 0.97931 0.89061 0.91573 0.89591 0.92803 0.94749 0.88229 0.90933 0.93378 0.83632 0.93004 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -52.15 13.64 21.84 0.30 -51.86 16 2 C 0.03 1.69 5.52 85.30 0.47 2.16 16 3 Si 1.17 64.94 25.82 68.60 1.77 66.71 16 4 H -0.30 -17.04 6.99 99.48 0.69 -16.35 16 5 H -0.30 -16.74 7.10 99.48 0.71 -16.04 16 6 H -0.31 -16.13 7.11 99.48 0.71 -15.43 16 7 C -0.61 -37.32 9.81 24.83 0.24 -37.08 16 8 H 0.05 3.27 8.00 -2.91 -0.02 3.24 16 9 C 0.59 33.52 7.78 86.36 0.67 34.19 16 10 O -0.63 -37.96 11.98 -4.33 -0.05 -38.01 16 11 N -0.65 -29.02 3.30 -862.39 -2.85 -31.87 16 12 C 0.10 3.48 7.77 81.65 0.63 4.12 16 13 C -0.10 -2.50 4.57 -10.91 -0.05 -2.55 16 14 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 15 C -0.10 -2.48 5.74 29.75 0.17 -2.31 16 16 C 0.07 1.71 6.45 85.96 0.55 2.26 16 17 N -0.70 -23.73 6.71 -518.53 -3.48 -27.21 16 18 C 0.07 2.12 5.92 86.07 0.51 2.63 16 19 C 0.12 4.08 4.24 39.57 0.17 4.24 16 20 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 21 H 0.27 16.21 8.72 -92.71 -0.81 15.40 16 22 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 23 H 0.05 1.96 7.81 -2.39 -0.02 1.94 16 24 H 0.03 1.15 7.48 -2.38 -0.02 1.13 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.05 0.97 8.06 -2.39 -0.02 0.95 16 28 H 0.35 10.51 8.90 -89.70 -0.80 9.72 16 29 H 0.05 2.00 7.73 -2.38 -0.02 1.99 16 30 H 0.07 1.58 8.07 -2.38 -0.02 1.56 16 Total: -1.00 -74.91 245.91 -0.65 -75.56 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: 0.29 Total: -0.99 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 3.37 Total: 7.67 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -6.03 Total: -110.94 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.05 Total: -38.01 kcal Atomic # 14 Polarization: 64.94 SS G_CDS: 1.77 Total: 66.71 kcal Total: -74.91 -0.65 -75.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580046012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.340 kcal (2) G-P(sol) polarization free energy of solvation -74.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds