Wall clock time and date at job start Sun Mar 29 2020 21:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99496 * 2 1 4 4 H 1.48495 * 109.47406 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47044 * 119.99844 * 3 2 1 6 6 H 1.48505 * 109.46979 * 239.99467 * 3 2 1 7 7 C 1.38946 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00585 * 202.95172 * 7 2 1 9 9 N 1.37098 * 119.99603 * 22.95272 * 7 2 1 10 10 C 1.34771 * 120.00387 * 44.43976 * 9 7 2 11 11 O 1.21298 * 119.99840 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00684 * 179.97438 * 10 9 7 13 13 H 1.09003 * 115.54534 * 325.58992 * 12 10 9 14 14 C 1.52993 * 117.49872 * 111.24786 * 12 10 9 15 15 C 1.52993 * 117.50351 * 179.91333 * 12 10 9 16 16 H 1.08999 * 117.50026 * 145.02284 * 15 12 10 17 17 N 1.46900 * 117.49972 * 359.97438 * 15 12 10 18 18 C 1.46504 * 119.99944 * 224.43651 * 9 7 2 19 19 C 1.52996 * 117.49853 * 2.53457 * 18 9 7 20 20 C 1.52995 * 117.49973 * 293.90747 * 18 9 7 21 21 H 0.97005 * 119.99878 * 185.29322 * 1 2 3 22 22 H 1.09001 * 117.50083 * 214.98432 * 14 12 10 23 23 H 1.08998 * 117.50325 * 0.02562 * 14 12 10 24 24 H 1.00901 * 111.00374 * 179.97438 * 17 15 12 25 25 H 1.00896 * 111.00261 * 303.96045 * 17 15 12 26 26 H 1.09001 * 115.54752 * 148.23462 * 18 9 7 27 27 H 1.09003 * 117.50210 * 359.97438 * 19 18 9 28 28 H 1.08999 * 117.50177 * 145.02261 * 19 18 9 29 29 H 1.08995 * 117.50044 * 214.97278 * 20 18 9 30 30 H 1.09004 * 117.50101 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 1.2830 2.7465 -0.0006 5 1 3.1017 1.6966 1.2126 6 1 3.1018 1.6965 -1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0248 -1.2401 0.3653 9 7 1.4049 -2.3438 -0.4620 10 6 0.6908 -2.3123 -1.6045 11 8 0.5822 -1.2748 -2.2235 12 6 0.0273 -3.5661 -2.1133 13 1 0.5681 -4.4936 -1.9254 14 6 -1.5013 -3.6203 -2.0786 15 6 -0.7708 -3.4649 -3.4147 16 1 -0.7552 -4.3259 -4.0829 17 7 -0.8321 -2.1528 -4.0725 18 6 1.5357 -3.5968 0.2858 19 6 2.3090 -3.5546 1.6052 20 6 2.9285 -4.2233 0.3764 21 1 -0.4850 -0.8365 0.0775 22 1 -1.9661 -4.5835 -1.8683 23 1 -2.0271 -2.7490 -1.6881 24 1 -1.3803 -2.1976 -4.9184 25 1 -1.1922 -1.4500 -3.4446 26 1 0.6828 -4.2727 0.2233 27 1 2.7208 -2.5947 1.9168 28 1 1.9650 -4.2029 2.4112 29 1 2.9921 -5.3114 0.3740 30 1 3.7476 -3.7035 -0.1207 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:55 Heat of formation + Delta-G solvation = 10.797475 kcal Electronic energy + Delta-G solvation = -14433.427547 eV Core-core repulsion = 12037.061219 eV Total energy + Delta-G solvation = -2396.366328 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.84474 -38.55504 -37.14820 -34.79691 -32.78302 -31.67701 -27.26025 -24.47478 -23.16262 -22.81966 -22.44510 -20.62618 -18.65193 -18.25813 -17.08795 -16.51973 -15.75758 -15.51010 -15.45868 -15.00116 -14.44706 -14.23049 -13.64893 -13.32647 -12.85647 -12.67851 -12.33708 -12.29051 -11.99088 -11.83645 -11.70826 -11.30543 -11.15608 -10.62592 -9.89488 -9.28758 -9.15826 -8.50412 -6.01763 1.47745 1.60421 1.76532 2.06966 2.47140 2.92876 3.02686 3.12876 3.36804 3.53215 3.89394 4.01345 4.05737 4.10850 4.20655 4.29854 4.50683 4.78522 4.79858 4.86599 4.98154 5.06904 5.20516 5.38645 5.77384 6.22291 6.25803 6.71470 6.95239 7.25667 7.60830 8.27724 8.73638 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.015583 C = 0.010586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.213273 B = 1796.431381 C = 2644.441659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C -0.006 4.006 3 Si 1.115 2.885 4 H -0.286 1.286 5 H -0.260 1.260 6 H -0.289 1.289 7 C -0.434 4.434 8 H 0.060 0.940 9 N -0.454 5.454 10 C 0.479 3.521 11 O -0.564 6.564 12 C -0.194 4.194 13 H 0.133 0.867 14 C -0.187 4.187 15 C 0.072 3.928 16 H 0.156 0.844 17 N -0.815 5.815 18 C 0.045 3.955 19 C -0.171 4.171 20 C -0.180 4.180 21 H 0.253 0.747 22 H 0.134 0.866 23 H 0.064 0.936 24 H 0.347 0.653 25 H 0.344 0.656 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 -10.669 -1.219 10.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.212 4.212 3 Si 0.937 3.063 4 H -0.211 1.211 5 H -0.184 1.184 6 H -0.216 1.216 7 C -0.561 4.561 8 H 0.077 0.923 9 N -0.176 5.176 10 C 0.268 3.732 11 O -0.444 6.444 12 C -0.217 4.217 13 H 0.151 0.849 14 C -0.228 4.228 15 C -0.041 4.041 16 H 0.173 0.827 17 N -0.346 5.346 18 C -0.060 4.060 19 C -0.209 4.209 20 C -0.218 4.218 21 H 0.062 0.938 22 H 0.152 0.848 23 H 0.083 0.917 24 H 0.161 0.839 25 H 0.160 0.840 26 H 0.143 0.857 27 H 0.095 0.905 28 H 0.137 0.863 29 H 0.145 0.855 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.375 -8.525 -1.683 8.698 hybrid contribution -0.706 -1.475 0.481 1.704 sum -1.081 -10.000 -1.203 10.130 Atomic orbital electron populations 1.70702 1.08259 1.29643 1.42474 1.27353 0.96166 1.05316 0.92358 0.82945 0.74270 0.71770 0.77300 1.21134 1.18437 1.21561 1.19844 0.98252 0.88481 1.49510 0.92272 1.43157 1.48174 1.07380 1.18851 1.20203 0.82725 0.89616 0.80638 1.90538 1.62328 1.33968 1.57555 1.22575 0.95443 0.97991 1.05660 0.84907 1.23624 0.91394 1.03723 1.04041 1.22459 0.99443 0.93898 0.88342 0.82662 1.58236 1.60887 1.05222 1.10231 1.21999 0.95695 0.89905 0.98398 1.23105 1.03948 1.02224 0.91616 1.23288 0.96252 1.00599 1.01678 0.93793 0.84790 0.91699 0.83870 0.84042 0.85679 0.90475 0.86271 0.85482 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -55.30 12.43 21.66 0.27 -55.03 16 2 C -0.01 -0.35 4.22 84.93 0.36 0.01 16 3 Si 1.11 53.98 29.98 68.60 2.06 56.04 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 5 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 7 C -0.43 -25.03 7.87 84.04 0.66 -24.37 16 8 H 0.06 3.40 7.27 -2.91 -0.02 3.38 16 9 N -0.45 -23.44 2.58 -613.14 -1.58 -25.02 16 10 C 0.48 24.75 6.23 87.66 0.55 25.29 16 11 O -0.56 -33.84 11.92 -3.09 -0.04 -33.87 16 12 C -0.19 -7.33 4.95 -11.54 -0.06 -7.38 16 13 H 0.13 4.25 7.33 -2.39 -0.02 4.23 16 14 C -0.19 -5.93 9.94 30.62 0.30 -5.63 16 15 C 0.07 2.31 7.21 44.94 0.32 2.63 16 16 H 0.16 3.63 8.14 -2.39 -0.02 3.61 16 17 N -0.82 -30.17 8.48 -168.58 -1.43 -31.60 16 18 C 0.04 1.79 5.59 44.99 0.25 2.04 16 19 C -0.17 -6.14 9.80 30.59 0.30 -5.84 16 20 C -0.18 -5.96 10.37 30.59 0.32 -5.65 16 21 H 0.25 16.21 7.42 -92.70 -0.69 15.52 16 22 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 23 H 0.06 2.47 8.09 -2.39 -0.02 2.45 16 24 H 0.35 9.92 9.08 -89.69 -0.81 9.11 16 25 H 0.34 14.98 7.30 -89.70 -0.65 14.33 16 26 H 0.13 4.31 7.16 -2.39 -0.02 4.29 16 27 H 0.08 3.24 6.71 -2.39 -0.02 3.23 16 28 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 29 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -75.05 253.93 2.06 -72.99 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.22 Total: 35.39 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 3.01 Total: -18.89 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -2.74 Total: -111.65 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.04 Total: -33.87 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 2.06 Total: 56.04 kcal Total: -75.05 2.06 -72.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.784 kcal (2) G-P(sol) polarization free energy of solvation -75.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds