Wall clock time and date at job start Sun Mar 29 2020 21:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.48462 * 111.00180 * 287.66497 * 11 10 9 13 13 C 1.54912 * 103.21305 * 200.05783 * 12 11 10 14 14 C 1.54412 * 102.98969 * 37.78617 * 13 12 11 15 15 H 1.09003 * 112.70317 * 100.20658 * 14 13 12 16 16 C 1.54226 * 108.98407 * 225.54738 * 14 13 12 17 17 N 1.48559 * 104.55019 * 136.84851 * 16 14 13 18 18 C 1.48493 * 104.21090 * 320.00751 * 17 16 14 19 19 C 1.47879 * 111.00025 * 169.99816 * 11 10 9 20 20 H 1.09004 * 111.76577 * 22.14148 * 19 11 10 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.09004 * 110.66266 * 318.48581 * 12 11 10 27 27 H 1.08998 * 110.67302 * 81.62041 * 12 11 10 28 28 H 1.08998 * 110.71009 * 279.41030 * 13 12 11 29 29 H 1.08995 * 110.71131 * 156.16544 * 13 12 11 30 30 H 1.09003 * 110.42215 * 18.08318 * 16 14 13 31 31 H 1.08997 * 110.42055 * 255.62063 * 16 14 13 32 32 H 1.00895 * 111.00306 * 79.56082 * 17 16 14 33 33 H 1.09000 * 110.37039 * 280.49990 * 18 17 16 34 34 H 1.08997 * 110.46350 * 158.21842 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 0.8808 -5.1844 1.3221 13 6 0.6294 -6.7129 1.3108 14 6 1.8784 -7.2648 0.5899 15 1 2.6210 -7.6638 1.2810 16 6 1.4343 -8.3069 -0.4567 17 7 2.2523 -8.0010 -1.6584 18 6 2.2828 -6.5173 -1.7106 19 6 2.4229 -6.0731 -0.2386 20 1 3.4541 -5.8248 0.0128 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 1.5602 -4.9122 2.1299 27 1 -0.0597 -4.6403 1.4091 28 1 -0.2752 -6.9506 0.7511 29 1 0.5680 -7.1010 2.3274 30 1 0.3734 -8.1934 -0.6799 31 1 1.6432 -9.3158 -0.1011 32 1 3.1835 -8.3788 -1.5678 33 1 1.3556 -6.1334 -2.1360 34 1 3.1375 -6.1740 -2.2934 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052045.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:11 Heat of formation + Delta-G solvation = 1.917018 kcal Electronic energy + Delta-G solvation = -14164.313457 eV Core-core repulsion = 11903.395138 eV Total energy + Delta-G solvation = -2260.918319 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.83714 -35.71325 -33.28879 -31.87735 -29.46850 -27.74894 -26.62265 -24.00644 -21.83227 -21.52981 -19.96673 -19.25429 -16.78180 -16.30503 -15.15118 -14.79975 -14.50966 -14.38906 -13.35902 -13.33774 -12.63132 -12.57137 -12.10946 -11.79274 -11.44215 -11.39683 -10.99843 -10.86963 -10.83366 -10.56464 -10.50597 -10.42505 -9.82689 -9.40676 -9.10463 -8.66172 -8.33841 -7.83917 -5.99264 -4.01823 3.31083 3.38400 3.42287 4.25636 4.39779 4.48185 4.65362 4.86366 5.06395 5.36425 5.36687 5.43634 5.47333 5.57584 5.72934 5.80450 5.93028 5.98850 6.08515 6.14189 6.31012 6.37301 6.44515 6.47280 6.67740 6.96856 7.35928 7.42412 7.52601 7.77484 7.89629 8.08710 8.43773 9.05759 9.61912 11.12164 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060037 B = 0.006566 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.270116 B = 4263.075552 C = 4476.120479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.031 3.969 10 C 0.054 3.946 11 N -0.506 5.506 12 C 0.040 3.960 13 C -0.114 4.114 14 C -0.135 4.135 15 H 0.078 0.922 16 C 0.050 3.950 17 N -0.671 5.671 18 C 0.053 3.947 19 C 0.031 3.969 20 H 0.057 0.943 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.015 0.985 24 H 0.020 0.980 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.330 0.670 33 H 0.095 0.905 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -14.546 1.371 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.073 4.073 11 N -0.230 5.230 12 C -0.088 4.088 13 C -0.153 4.153 14 C -0.156 4.156 15 H 0.097 0.903 16 C -0.080 4.080 17 N -0.297 5.297 18 C -0.077 4.077 19 C -0.080 4.080 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.577 -14.513 0.392 14.745 hybrid contribution 1.772 1.329 1.523 2.688 sum 4.348 -13.184 1.915 14.014 Atomic orbital electron populations 1.69988 1.06022 1.26452 1.50748 1.24996 0.94829 0.99178 0.95318 0.86543 0.80058 0.83840 0.77599 1.19813 1.20938 1.21036 1.21236 0.92971 0.91119 1.50759 0.92836 1.19028 0.93885 0.89965 0.97795 1.22519 0.96861 0.89104 0.98831 1.64916 1.27964 1.01665 1.28448 1.23223 1.00185 0.94780 0.90656 1.22554 0.97250 0.95682 0.99775 1.23300 0.97949 0.96387 0.97945 0.90325 1.23105 0.99407 0.97246 0.88193 1.63345 1.17170 1.10112 1.39031 1.23064 1.03255 0.86606 0.94758 1.23815 0.95595 0.91897 0.96719 0.92461 0.93050 0.95715 0.96648 0.96159 0.92236 0.94248 0.89702 0.90558 0.91670 0.89840 0.91448 0.85541 0.88697 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.81 5.06 -27.89 -0.14 0.67 16 10 C 0.05 1.17 4.67 -3.83 -0.02 1.15 16 11 N -0.51 -9.33 4.70 -221.16 -1.04 -10.37 16 12 C 0.04 0.67 5.90 -1.95 -0.01 0.65 16 13 C -0.11 -1.50 6.60 -24.98 -0.16 -1.66 16 14 C -0.14 -1.69 4.02 -88.17 -0.35 -2.05 16 15 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 16 C 0.05 0.58 7.01 -2.26 -0.02 0.56 16 17 N -0.67 -8.25 7.62 -109.80 -0.84 -9.09 16 18 C 0.05 0.76 7.16 -2.21 -0.02 0.74 16 19 C 0.03 0.46 3.46 -65.38 -0.23 0.24 16 20 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.02 0.43 7.35 -51.93 -0.38 0.04 16 24 H 0.02 0.44 7.84 -51.93 -0.41 0.03 16 25 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 26 H 0.04 0.67 7.82 -51.93 -0.41 0.27 16 27 H 0.08 1.54 7.79 -51.93 -0.40 1.13 16 28 H 0.08 0.99 7.19 -51.93 -0.37 0.62 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.02 7.19 -51.93 -0.37 0.65 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.33 3.44 8.92 -39.29 -0.35 3.09 16 33 H 0.09 1.56 7.96 -51.93 -0.41 1.14 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 269.62 15.07 4.06 4.06 Total: -1.00 -30.21 269.62 -9.05 -39.25 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.59 Total: -0.83 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.36 Total: -13.41 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -1.14 Total: -45.89 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.21 -9.05 -39.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052045.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.168 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds