Wall clock time and date at job start Sun Mar 29 2020 21:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.48462 * 111.00180 * 287.66497 * 11 10 9 13 13 C 1.54912 * 103.21305 * 200.05783 * 12 11 10 14 14 C 1.54412 * 102.98969 * 37.78617 * 13 12 11 15 15 H 1.09003 * 112.70317 * 100.20658 * 14 13 12 16 16 C 1.54226 * 108.98407 * 225.54738 * 14 13 12 17 17 N 1.48559 * 104.55019 * 136.84851 * 16 14 13 18 18 C 1.48493 * 104.21090 * 320.00751 * 17 16 14 19 19 C 1.47879 * 111.00025 * 169.99816 * 11 10 9 20 20 H 1.09004 * 111.76577 * 22.14148 * 19 11 10 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.09004 * 110.66266 * 318.48581 * 12 11 10 27 27 H 1.08998 * 110.67302 * 81.62041 * 12 11 10 28 28 H 1.08998 * 110.71009 * 279.41030 * 13 12 11 29 29 H 1.08995 * 110.71131 * 156.16544 * 13 12 11 30 30 H 1.09003 * 110.42215 * 18.08318 * 16 14 13 31 31 H 1.08997 * 110.42055 * 255.62063 * 16 14 13 32 32 H 1.00895 * 111.00306 * 79.56082 * 17 16 14 33 33 H 1.09000 * 110.37039 * 280.49990 * 18 17 16 34 34 H 1.08997 * 110.46350 * 158.21842 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 0.8808 -5.1844 1.3221 13 6 0.6294 -6.7129 1.3108 14 6 1.8784 -7.2648 0.5899 15 1 2.6210 -7.6638 1.2810 16 6 1.4343 -8.3069 -0.4567 17 7 2.2523 -8.0010 -1.6584 18 6 2.2828 -6.5173 -1.7106 19 6 2.4229 -6.0731 -0.2386 20 1 3.4541 -5.8248 0.0128 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 1.5602 -4.9122 2.1299 27 1 -0.0597 -4.6403 1.4091 28 1 -0.2752 -6.9506 0.7511 29 1 0.5680 -7.1010 2.3274 30 1 0.3734 -8.1934 -0.6799 31 1 1.6432 -9.3158 -0.1011 32 1 3.1835 -8.3788 -1.5678 33 1 1.3556 -6.1334 -2.1360 34 1 3.1375 -6.1740 -2.2934 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052045.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:11 Heat of formation + Delta-G solvation = -20.425536 kcal Electronic energy + Delta-G solvation = -14165.282302 eV Core-core repulsion = 11903.395138 eV Total energy + Delta-G solvation = -2261.887165 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.03168 -37.10197 -35.23667 -33.41830 -31.14151 -28.99895 -28.01451 -25.87919 -23.15740 -22.85755 -21.58835 -20.42159 -18.57443 -17.77043 -16.64166 -16.27731 -16.07724 -15.88883 -14.81423 -14.57595 -14.38596 -14.02569 -13.49672 -13.36884 -13.06925 -12.81966 -12.62323 -12.48822 -12.33217 -11.91048 -11.74968 -11.64160 -11.54697 -11.37871 -11.21801 -10.58398 -9.74263 -9.26021 -8.22608 -6.34730 1.38415 1.39201 1.52463 2.38306 3.05319 3.10660 3.32961 3.46150 3.75095 4.05117 4.22538 4.28252 4.38504 4.40750 4.48720 4.51866 4.65113 4.71199 4.86400 4.95088 5.02624 5.05192 5.16335 5.17934 5.29661 5.42629 5.57531 5.65227 5.76490 6.03546 6.19541 6.29094 6.50643 6.82580 7.34802 8.89911 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060037 B = 0.006566 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.270116 B = 4263.075552 C = 4476.120479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.040 3.960 10 C 0.073 3.927 11 N -0.522 5.522 12 C 0.033 3.967 13 C -0.104 4.104 14 C -0.126 4.126 15 H 0.101 0.899 16 C 0.054 3.946 17 N -0.671 5.671 18 C 0.058 3.942 19 C 0.026 3.974 20 H 0.059 0.941 21 H 0.264 0.736 22 H -0.010 1.010 23 H -0.010 1.010 24 H 0.020 0.980 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.345 0.655 33 H 0.068 0.932 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 -15.695 1.778 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.003 3.997 10 C -0.055 4.055 11 N -0.246 5.246 12 C -0.095 4.095 13 C -0.142 4.142 14 C -0.146 4.146 15 H 0.119 0.881 16 C -0.076 4.076 17 N -0.298 5.298 18 C -0.073 4.073 19 C -0.084 4.084 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.009 0.991 23 H 0.008 0.992 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.161 0.839 33 H 0.086 0.914 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.053 -15.692 0.798 16.227 hybrid contribution 1.270 1.653 1.386 2.503 sum 5.324 -14.039 2.184 15.173 Atomic orbital electron populations 1.70126 1.07895 1.27787 1.51410 1.25995 0.95768 1.03435 0.94523 0.85348 0.78985 0.78499 0.77895 1.18564 1.20214 1.20222 1.21651 0.93468 0.92314 1.50988 0.92262 1.18837 0.94094 0.91960 0.94825 1.22119 0.95410 0.89245 0.98739 1.64814 1.28734 1.01495 1.29593 1.23258 0.98792 0.97634 0.89797 1.22522 0.97691 0.92397 1.01576 1.23318 0.97817 0.95393 0.98082 0.88065 1.23124 0.98729 0.98400 0.87318 1.63273 1.18379 1.08417 1.39713 1.22896 1.02107 0.88094 0.94174 1.23944 0.95045 0.91512 0.97929 0.92281 0.92695 0.99134 0.99177 0.96188 0.92185 0.94572 0.92199 0.90558 0.89010 0.90814 0.88442 0.83891 0.91364 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.24 5.06 29.85 0.15 2.39 16 10 C 0.07 3.22 4.67 86.30 0.40 3.62 16 11 N -0.52 -19.54 4.70 -853.62 -4.01 -23.55 16 12 C 0.03 1.13 5.90 86.65 0.51 1.64 16 13 C -0.10 -2.52 6.60 31.73 0.21 -2.31 16 14 C -0.13 -2.79 4.02 -9.21 -0.04 -2.83 16 15 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 16 C 0.05 1.07 7.01 86.40 0.61 1.67 16 17 N -0.67 -14.86 7.62 -501.29 -3.82 -18.69 16 18 C 0.06 1.59 7.16 86.47 0.62 2.21 16 19 C 0.03 0.76 3.46 45.89 0.16 0.91 16 20 H 0.06 1.71 7.82 -2.38 -0.02 1.69 16 21 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 22 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 23 H -0.01 -0.60 7.35 -2.39 -0.02 -0.62 16 24 H 0.02 0.87 7.84 -2.39 -0.02 0.85 16 25 H 0.06 2.60 8.08 -2.39 -0.02 2.58 16 26 H 0.04 1.24 7.82 -2.38 -0.02 1.22 16 27 H 0.06 2.29 7.79 -2.39 -0.02 2.27 16 28 H 0.08 1.87 7.19 -2.39 -0.02 1.85 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.63 7.19 -2.39 -0.02 1.62 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.34 6.09 8.92 -89.70 -0.80 5.29 16 33 H 0.07 2.26 7.96 -2.39 -0.02 2.24 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -66.28 269.62 -1.94 -68.22 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.27 Total: 8.81 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 3.32 Total: -23.94 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -7.55 Total: -100.02 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -66.28 -1.94 -68.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052045.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.792 kcal (2) G-P(sol) polarization free energy of solvation -66.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds