Wall clock time and date at job start Sun Mar 29 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.50701 * 109.47173 * 184.99641 * 4 2 1 6 6 C 1.35454 * 126.77357 * 89.70656 * 5 4 2 7 7 C 1.41381 * 103.98457 * 179.90875 * 6 5 4 8 8 N 1.30175 * 106.39287 * 0.36661 * 7 6 5 9 9 O 1.20923 * 111.60790 * 359.76418 * 8 7 6 10 10 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 11 11 C 1.46901 * 110.99793 * 85.00144 * 10 2 1 12 12 C 1.50701 * 109.46921 * 179.97438 * 11 10 2 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47094 * 90.00289 * 16 14 12 18 18 H 1.48505 * 109.47195 * 210.00171 * 16 14 12 19 19 H 1.48493 * 109.47449 * 330.00136 * 16 14 12 20 20 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 21 21 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 23 23 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 24 24 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 25 25 H 1.07999 * 128.00589 * 0.02562 * 6 5 4 26 26 H 1.08002 * 126.79992 * 180.16493 * 7 6 5 27 27 H 1.00899 * 110.99995 * 321.04542 * 10 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 11 10 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 11 10 2 30 30 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.2609 0.3655 1.9098 7 6 5.6050 -0.0097 1.6824 8 7 5.5667 -1.1171 0.9992 9 8 4.4298 -1.4687 0.7843 10 7 2.0196 -0.6925 -1.1995 11 6 2.0824 0.2226 -2.3469 12 6 2.5884 -0.5216 -3.5558 13 1 2.8379 -1.5695 -3.4794 14 6 2.7318 0.1353 -4.7595 15 7 2.4274 1.4113 -4.8526 16 14 3.3583 -0.7872 -6.2581 17 1 2.2094 -1.3702 -6.9965 18 1 4.0927 0.1503 -7.1453 19 1 4.2709 -1.8751 -5.8238 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6054 -0.2617 2.1370 24 1 1.7517 -1.7715 1.2056 25 1 3.8928 1.2320 2.4389 26 1 6.4883 0.5195 2.0079 27 1 1.4495 -1.4980 -1.4100 28 1 2.7588 1.0462 -2.1183 29 1 1.0870 0.6163 -2.5525 30 1 2.5286 1.8735 -5.6994 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659028455.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:10 Heat of formation + Delta-G solvation = 50.390701 kcal Electronic energy + Delta-G solvation = -13711.661238 eV Core-core repulsion = 11317.011801 eV Total energy + Delta-G solvation = -2394.649437 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.43097 -36.95857 -33.58943 -33.08965 -31.91848 -29.84431 -26.71524 -25.92042 -23.04669 -21.99117 -21.14212 -20.25656 -17.03841 -16.99529 -16.24141 -15.03173 -14.77177 -14.35977 -13.87156 -13.46791 -13.03602 -12.90563 -12.14558 -12.06953 -11.86490 -11.34851 -11.26761 -10.89806 -10.71384 -10.61409 -10.51827 -10.03890 -9.87583 -9.21275 -8.88054 -8.47023 -7.28878 -6.01478 -4.02731 1.94966 2.66039 3.33636 3.39742 3.45661 3.56945 4.45100 4.72642 4.82399 5.13809 5.31121 5.34962 5.40529 5.47360 5.64306 5.72983 5.87132 5.93579 6.01991 6.18807 6.32014 6.44742 6.49875 7.24545 7.43126 7.80482 8.13582 8.39448 8.61684 8.71343 9.06591 9.62127 11.09627 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.008632 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.409819 B = 3243.124244 C = 3817.757383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.082 3.918 3 H 0.075 0.925 4 C -0.033 4.033 5 C 0.014 3.986 6 C -0.258 4.258 7 C -0.019 4.019 8 N -0.374 5.374 9 O 0.117 5.883 10 N -0.683 5.683 11 C 0.197 3.803 12 C -0.512 4.512 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.272 1.272 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.164 0.836 26 H 0.183 0.817 27 H 0.331 0.669 28 H 0.024 0.976 29 H -0.012 1.012 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 -1.771 13.439 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.029 4.029 3 H 0.094 0.906 4 C -0.072 4.072 5 C -0.050 4.050 6 C -0.280 4.280 7 C -0.197 4.197 8 N -0.075 5.075 9 O 0.050 5.950 10 N -0.313 5.313 11 C 0.071 3.929 12 C -0.551 4.551 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.197 1.197 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.181 0.819 26 H 0.200 0.800 27 H 0.148 0.852 28 H 0.042 0.958 29 H 0.006 0.994 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.028 -2.355 12.951 13.163 hybrid contribution -0.901 0.633 -0.749 1.332 sum -0.928 -1.721 12.202 12.358 Atomic orbital electron populations 1.22478 0.97273 1.01875 1.02072 1.21537 0.92154 0.98130 0.91118 0.90641 1.20344 0.84369 1.03242 0.99284 1.24324 0.94934 0.91003 0.94745 1.22422 0.92611 1.03138 1.09858 1.24888 0.98946 0.95285 1.00621 1.73858 1.00510 1.16340 1.16820 1.84849 1.10180 1.43036 1.56984 1.60753 1.55286 1.10459 1.04801 1.19540 0.95159 0.91670 0.86559 1.21196 1.43340 0.96992 0.93542 0.91926 1.24979 0.95660 0.94921 0.99030 1.69960 1.49073 1.08996 1.25846 0.86500 0.78929 0.79620 0.82410 1.20724 1.21287 1.19712 0.91914 0.92584 0.92884 0.89038 0.89630 0.81852 0.80018 0.85159 0.95766 0.99433 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.16 37.16 0.34 -2.11 16 2 C 0.08 1.32 2.58 -67.71 -0.17 1.15 16 3 H 0.08 1.33 7.80 -51.93 -0.40 0.92 16 4 C -0.03 -0.44 5.46 -27.88 -0.15 -0.59 16 5 C 0.01 0.22 6.47 -35.30 -0.23 0.00 16 6 C -0.26 -3.68 11.09 -39.38 -0.44 -4.11 16 7 C -0.02 -0.29 12.17 -17.06 -0.21 -0.50 16 8 N -0.37 -6.91 12.07 30.36 0.37 -6.54 16 9 O 0.12 2.17 11.20 17.19 0.19 2.36 16 10 N -0.68 -14.13 5.95 -107.99 -0.64 -14.77 16 11 C 0.20 5.13 5.24 -4.97 -0.03 5.11 16 12 C -0.51 -14.70 9.32 -34.44 -0.32 -15.02 16 13 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 16 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H 0.06 1.00 7.45 -51.93 -0.39 0.61 16 21 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 27 H 0.33 6.52 8.46 -39.29 -0.33 6.19 16 28 H 0.02 0.70 8.06 -51.93 -0.42 0.28 16 29 H -0.01 -0.33 7.44 -51.93 -0.39 -0.71 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 264.31 15.07 3.98 3.98 Total: -1.00 -32.03 264.31 -5.70 -37.73 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.01 Total: 1.08 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -1.30 Total: -14.57 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.46 Total: -47.73 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.19 Total: 2.36 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.03 -5.70 -37.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659028455.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.116 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds