Wall clock time and date at job start Sun Mar 29 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.50701 * 109.47173 * 184.99641 * 4 2 1 6 6 C 1.35454 * 126.77357 * 89.70656 * 5 4 2 7 7 C 1.41381 * 103.98457 * 179.90875 * 6 5 4 8 8 N 1.30175 * 106.39287 * 0.36661 * 7 6 5 9 9 O 1.20923 * 111.60790 * 359.76418 * 8 7 6 10 10 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 11 11 C 1.46901 * 110.99793 * 85.00144 * 10 2 1 12 12 C 1.50701 * 109.46921 * 179.97438 * 11 10 2 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47094 * 90.00289 * 16 14 12 18 18 H 1.48505 * 109.47195 * 210.00171 * 16 14 12 19 19 H 1.48493 * 109.47449 * 330.00136 * 16 14 12 20 20 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 21 21 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 23 23 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 24 24 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 25 25 H 1.07999 * 128.00589 * 0.02562 * 6 5 4 26 26 H 1.08002 * 126.79992 * 180.16493 * 7 6 5 27 27 H 1.00899 * 110.99995 * 321.04542 * 10 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 11 10 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 11 10 2 30 30 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.2609 0.3655 1.9098 7 6 5.6050 -0.0097 1.6824 8 7 5.5667 -1.1171 0.9992 9 8 4.4298 -1.4687 0.7843 10 7 2.0196 -0.6925 -1.1995 11 6 2.0824 0.2226 -2.3469 12 6 2.5884 -0.5216 -3.5558 13 1 2.8379 -1.5695 -3.4794 14 6 2.7318 0.1353 -4.7595 15 7 2.4274 1.4113 -4.8526 16 14 3.3583 -0.7872 -6.2581 17 1 2.2094 -1.3702 -6.9965 18 1 4.0927 0.1503 -7.1453 19 1 4.2709 -1.8751 -5.8238 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6054 -0.2617 2.1370 24 1 1.7517 -1.7715 1.2056 25 1 3.8928 1.2320 2.4389 26 1 6.4883 0.5195 2.0079 27 1 1.4495 -1.4980 -1.4100 28 1 2.7588 1.0462 -2.1183 29 1 1.0870 0.6163 -2.5525 30 1 2.5286 1.8735 -5.6994 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659028455.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:10 Heat of formation + Delta-G solvation = 27.938316 kcal Electronic energy + Delta-G solvation = -13712.634847 eV Core-core repulsion = 11317.011801 eV Total energy + Delta-G solvation = -2395.623045 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.65724 -38.40866 -35.26595 -34.58442 -33.47900 -31.40399 -27.92292 -27.83661 -24.26269 -23.91922 -22.49390 -21.56326 -18.66115 -18.25388 -18.02449 -16.79716 -16.10952 -15.91470 -15.46804 -14.91654 -14.27036 -14.15732 -13.89645 -13.59480 -13.26525 -13.04978 -12.71930 -12.61253 -12.40254 -12.12525 -11.87391 -11.75965 -11.30255 -11.25752 -10.67564 -10.12659 -9.00100 -8.23614 -6.33637 0.73619 1.37957 1.39970 1.51305 1.51729 2.38509 2.44521 3.09629 3.54664 3.65230 3.86653 4.09934 4.25058 4.31833 4.49125 4.62053 4.76321 4.90294 4.90783 5.00031 5.07182 5.18393 5.31388 5.32939 5.43218 5.62625 6.04330 6.49534 6.77273 6.94259 7.37169 7.49145 8.87586 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.008632 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.409819 B = 3243.124244 C = 3817.757383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 H 0.056 0.944 4 C -0.024 4.024 5 C -0.003 4.003 6 C -0.254 4.254 7 C -0.019 4.019 8 N -0.414 5.414 9 O 0.081 5.919 10 N -0.687 5.687 11 C 0.217 3.783 12 C -0.534 4.534 13 H 0.060 0.940 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.269 1.269 20 H 0.032 0.968 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.136 0.864 24 H 0.097 0.903 25 H 0.198 0.802 26 H 0.214 0.786 27 H 0.337 0.663 28 H -0.012 1.012 29 H -0.033 1.033 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 -2.103 14.501 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.031 4.031 3 H 0.074 0.926 4 C -0.062 4.062 5 C -0.067 4.067 6 C -0.275 4.275 7 C -0.196 4.196 8 N -0.121 5.121 9 O 0.019 5.981 10 N -0.318 5.318 11 C 0.089 3.911 12 C -0.573 4.573 13 H 0.078 0.922 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.792 3.208 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.194 1.194 20 H 0.052 0.948 21 H 0.090 0.910 22 H 0.106 0.894 23 H 0.154 0.846 24 H 0.116 0.884 25 H 0.215 0.785 26 H 0.230 0.770 27 H 0.155 0.845 28 H 0.006 0.994 29 H -0.015 1.015 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.505 -2.708 14.033 14.301 hybrid contribution -0.762 0.801 -0.989 1.483 sum -1.267 -1.907 13.044 13.243 Atomic orbital electron populations 1.22364 0.95032 1.03032 1.02345 1.21645 0.93983 0.97141 0.90361 0.92552 1.20435 0.82775 1.04018 0.98980 1.24959 0.95952 0.91116 0.94706 1.22914 0.91933 1.03495 1.09171 1.25564 1.00767 0.94332 0.98975 1.73847 1.00977 1.18322 1.18943 1.84791 1.10706 1.44414 1.58227 1.60612 1.56686 1.10043 1.04427 1.19087 0.92792 0.91228 0.87991 1.21579 1.43617 0.97140 0.94915 0.92161 1.25906 0.95674 0.95794 1.02295 1.70080 1.49908 1.10535 1.26826 0.85404 0.78650 0.78273 0.78434 1.19266 1.20744 1.19398 0.94837 0.90989 0.89359 0.84599 0.88448 0.78515 0.76953 0.84491 0.99387 1.01488 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 9.16 71.98 0.66 -3.65 16 2 C 0.08 2.47 2.58 44.91 0.12 2.58 16 3 H 0.06 1.96 7.80 -2.39 -0.02 1.95 16 4 C -0.02 -0.55 5.46 29.85 0.16 -0.39 16 5 C 0.00 -0.10 6.47 25.04 0.16 0.06 16 6 C -0.25 -6.67 11.09 22.40 0.25 -6.42 16 7 C -0.02 -0.54 12.17 85.71 1.04 0.50 16 8 N -0.41 -15.32 12.07 -59.25 -0.72 -16.03 16 9 O 0.08 3.02 11.20 71.67 0.80 3.82 16 10 N -0.69 -28.67 5.95 -495.56 -2.95 -31.62 16 11 C 0.22 11.67 5.24 85.56 0.45 12.12 16 12 C -0.53 -31.27 9.32 25.60 0.24 -31.03 16 13 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 14 C 0.00 0.08 5.46 84.66 0.46 0.54 16 15 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 16 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 H 0.03 1.04 7.45 -2.39 -0.02 1.03 16 21 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 22 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.20 3.63 8.06 -2.91 -0.02 3.61 16 26 H 0.21 4.47 8.06 -2.91 -0.02 4.45 16 27 H 0.34 13.27 8.46 -89.69 -0.76 12.51 16 28 H -0.01 -0.72 8.06 -2.39 -0.02 -0.74 16 29 H -0.03 -1.84 7.44 -2.39 -0.02 -1.86 16 30 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -71.44 264.31 3.36 -68.08 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.37 Total: 10.77 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 3.54 Total: -25.68 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -3.38 Total: -104.71 kcal Atomic # 8 Polarization: 3.02 SS G_CDS: 0.80 Total: 3.82 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.44 3.36 -68.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659028455.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.022 kcal (2) G-P(sol) polarization free energy of solvation -71.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds