Wall clock time and date at job start Sun Mar 29 2020 22:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46891 * 2 1 4 4 H 1.08996 * 109.46513 * 304.24121 * 3 2 1 5 5 C 1.53047 * 109.45945 * 64.20825 * 3 2 1 6 6 C 1.53118 * 109.27405 * 179.19342 * 5 3 2 7 7 C 1.53122 * 109.16158 * 302.34072 * 6 5 3 8 8 C 1.53033 * 109.27613 * 57.66173 * 7 6 5 9 9 N 1.46846 * 109.46290 * 184.25466 * 3 2 1 10 10 C 1.46907 * 110.99808 * 54.15095 * 9 3 2 11 11 C 1.52995 * 109.47072 * 175.81930 * 10 9 3 12 12 C 1.50700 * 109.46872 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00123 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00174 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99402 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00105 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46933 * 60.00015 * 16 14 12 18 18 H 1.48500 * 109.46822 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47200 * 299.99912 * 16 14 12 20 20 H 1.08995 * 109.47115 * 54.82399 * 1 2 3 21 21 H 1.08995 * 109.47035 * 294.81893 * 1 2 3 22 22 H 1.09004 * 109.46469 * 174.81880 * 1 2 3 23 23 H 1.08996 * 109.47442 * 120.00383 * 2 1 3 24 24 H 1.09002 * 109.47249 * 240.00332 * 2 1 3 25 25 H 1.09000 * 109.49928 * 299.13409 * 5 3 2 26 26 H 1.08997 * 109.50314 * 59.25186 * 5 3 2 27 27 H 1.09011 * 109.51822 * 182.43882 * 6 5 3 28 28 H 1.08994 * 109.52359 * 62.25515 * 6 5 3 29 29 H 1.08995 * 109.50260 * 297.71757 * 7 6 5 30 30 H 1.09005 * 109.49896 * 177.59789 * 7 6 5 31 31 H 1.09001 * 109.46438 * 180.80499 * 8 7 6 32 32 H 1.09000 * 109.45744 * 60.82670 * 8 7 6 33 33 H 1.09004 * 109.46895 * 295.82037 * 10 9 3 34 34 H 1.08998 * 109.46804 * 55.81943 * 10 9 3 35 35 H 1.08997 * 109.47460 * 299.99448 * 11 10 9 36 36 H 1.08998 * 109.47296 * 60.00314 * 11 10 9 37 37 H 0.97003 * 119.99554 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9777 -0.8495 5 6 1.6179 2.1325 1.2993 6 6 2.1475 3.5692 1.3037 7 6 3.6705 3.5439 1.1469 8 6 4.0330 2.8131 -0.1479 9 7 3.5048 1.4436 -0.1027 10 6 3.9514 0.6685 -1.2680 11 6 5.4716 0.7787 -1.4016 12 6 5.9297 -0.0169 -2.5967 13 1 5.2087 -0.5477 -3.2007 14 6 7.2693 -0.0664 -2.9196 15 7 8.1472 0.5803 -2.1843 16 14 7.8372 -1.0532 -4.4005 17 1 7.1919 -0.5206 -5.6273 18 1 9.3127 -0.9462 -4.5303 19 1 7.4587 -2.4779 -4.2208 20 1 -0.3633 0.5920 -0.8400 21 1 -0.3633 0.4313 0.9327 22 1 -0.3632 -1.0235 -0.0928 23 1 1.8934 -0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 0.5302 2.1453 1.3677 26 1 2.0303 1.5900 2.1500 27 1 1.8863 4.0507 2.2462 28 1 1.7051 4.1230 0.4758 29 1 4.1151 3.0236 1.9952 30 1 4.0491 4.5653 1.1065 31 1 5.1172 2.7808 -0.2554 32 1 3.5994 3.3417 -0.9968 33 1 3.6730 -0.3772 -1.1372 34 1 3.4782 1.0607 -2.1682 35 1 5.7500 1.8244 -1.5325 36 1 5.9448 0.3866 -0.5015 37 1 9.0895 0.5458 -2.4117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033947161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:05 Heat of formation + Delta-G solvation = -24.919783 kcal Electronic energy + Delta-G solvation = -14612.172933 eV Core-core repulsion = 12388.205315 eV Total energy + Delta-G solvation = -2223.967618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.03045 -34.20019 -33.74519 -32.38358 -29.01334 -28.93161 -24.97276 -24.03706 -22.95471 -20.49578 -20.08759 -19.16353 -16.50261 -15.25901 -14.77451 -14.62795 -14.23890 -14.01887 -13.73051 -13.12357 -12.86167 -12.53220 -12.37098 -11.97896 -11.54657 -11.27562 -11.09316 -10.96354 -10.86608 -10.66210 -10.56350 -10.46907 -10.12379 -9.84093 -9.60670 -9.21956 -9.03603 -8.30568 -7.58654 -5.97855 -3.99944 3.34633 3.38850 3.41345 4.39839 4.55118 5.02801 5.03759 5.19318 5.33558 5.37867 5.42781 5.59271 5.59799 5.74108 5.90315 5.92842 5.96002 6.11045 6.15083 6.17865 6.23458 6.30937 6.40005 6.44752 6.49878 6.54719 6.67887 6.72879 7.02640 7.60246 7.70074 7.88491 7.92317 8.10739 8.46646 9.06848 9.63414 11.13565 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038566 B = 0.007436 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.860153 B = 3764.703807 C = 4367.539383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.031 0.969 5 C -0.110 4.110 6 C -0.120 4.120 7 C -0.117 4.117 8 C 0.052 3.948 9 N -0.535 5.535 10 C 0.061 3.939 11 C 0.023 3.977 12 C -0.522 4.522 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.016 0.984 35 H 0.019 0.981 36 H 0.024 0.976 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.647 3.467 5.907 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.024 4.024 4 H 0.049 0.951 5 C -0.148 4.148 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.076 4.076 9 N -0.260 5.260 10 C -0.065 4.065 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.037 0.963 36 H 0.043 0.957 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.265 3.279 6.339 14.191 hybrid contribution 0.091 -0.121 -1.617 1.624 sum -12.175 3.159 4.722 13.435 Atomic orbital electron populations 1.21792 0.96248 1.01232 1.01396 1.21649 0.94809 0.96488 1.03055 1.21611 0.88978 0.95462 0.96314 0.95148 1.21650 0.99401 0.95573 0.98159 1.21582 0.96527 0.96802 1.00857 1.21605 0.95313 0.99553 0.98967 1.22153 1.01803 0.88287 0.95364 1.62032 1.07555 1.13120 1.43277 1.22343 0.99579 0.96535 0.88064 1.19196 0.87967 0.97185 0.97055 1.21170 0.92383 1.30676 1.11833 0.92871 1.24990 0.96847 0.95715 0.96736 1.69961 1.01926 1.42524 1.38921 0.86660 0.77478 0.80691 0.83181 1.20322 1.21267 1.20222 0.93134 0.92812 0.92940 0.91322 0.91311 0.92151 0.91349 0.92464 0.92754 0.91307 0.92184 0.89034 0.95915 0.91655 0.96613 0.96296 0.95742 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.52 37.16 0.35 -1.35 16 2 C -0.12 -1.76 5.13 -26.73 -0.14 -1.90 16 3 C 0.09 1.33 1.92 -67.72 -0.13 1.20 16 4 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.11 -1.46 5.09 -26.65 -0.14 -1.59 16 6 C -0.12 -1.54 6.00 -26.61 -0.16 -1.70 16 7 C -0.12 -1.71 6.09 -26.65 -0.16 -1.87 16 8 C 0.05 0.94 5.03 -3.83 -0.02 0.92 16 9 N -0.53 -10.12 4.60 -226.68 -1.04 -11.17 16 10 C 0.06 1.34 4.38 -3.82 -0.02 1.32 16 11 C 0.02 0.61 4.46 -27.89 -0.12 0.49 16 12 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 16 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.56 6.82 -51.93 -0.35 0.20 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.07 1.08 6.17 -51.93 -0.32 0.76 16 25 H 0.06 0.69 6.70 -51.93 -0.35 0.34 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.88 5.84 -51.93 -0.30 1.58 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 1.41 6.38 -51.93 -0.33 1.08 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.52 6.19 -51.93 -0.32 0.20 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 282.79 15.07 4.26 4.26 Total: -1.00 -29.67 282.79 -8.60 -38.27 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.59 Total: -3.63 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.94 Total: -18.21 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.31 Total: -37.55 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.67 -8.60 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033947161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.347 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds