Wall clock time and date at job start Sun Mar 29 2020 22:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46891 * 2 1 4 4 H 1.08996 * 109.46513 * 304.24121 * 3 2 1 5 5 C 1.53047 * 109.45945 * 64.20825 * 3 2 1 6 6 C 1.53118 * 109.27405 * 179.19342 * 5 3 2 7 7 C 1.53122 * 109.16158 * 302.34072 * 6 5 3 8 8 C 1.53033 * 109.27613 * 57.66173 * 7 6 5 9 9 N 1.46846 * 109.46290 * 184.25466 * 3 2 1 10 10 C 1.46907 * 110.99808 * 54.15095 * 9 3 2 11 11 C 1.52995 * 109.47072 * 175.81930 * 10 9 3 12 12 C 1.50700 * 109.46872 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00123 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00174 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99402 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00105 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46933 * 60.00015 * 16 14 12 18 18 H 1.48500 * 109.46822 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47200 * 299.99912 * 16 14 12 20 20 H 1.08995 * 109.47115 * 54.82399 * 1 2 3 21 21 H 1.08995 * 109.47035 * 294.81893 * 1 2 3 22 22 H 1.09004 * 109.46469 * 174.81880 * 1 2 3 23 23 H 1.08996 * 109.47442 * 120.00383 * 2 1 3 24 24 H 1.09002 * 109.47249 * 240.00332 * 2 1 3 25 25 H 1.09000 * 109.49928 * 299.13409 * 5 3 2 26 26 H 1.08997 * 109.50314 * 59.25186 * 5 3 2 27 27 H 1.09011 * 109.51822 * 182.43882 * 6 5 3 28 28 H 1.08994 * 109.52359 * 62.25515 * 6 5 3 29 29 H 1.08995 * 109.50260 * 297.71757 * 7 6 5 30 30 H 1.09005 * 109.49896 * 177.59789 * 7 6 5 31 31 H 1.09001 * 109.46438 * 180.80499 * 8 7 6 32 32 H 1.09000 * 109.45744 * 60.82670 * 8 7 6 33 33 H 1.09004 * 109.46895 * 295.82037 * 10 9 3 34 34 H 1.08998 * 109.46804 * 55.81943 * 10 9 3 35 35 H 1.08997 * 109.47460 * 299.99448 * 11 10 9 36 36 H 1.08998 * 109.47296 * 60.00314 * 11 10 9 37 37 H 0.97003 * 119.99554 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9777 -0.8495 5 6 1.6179 2.1325 1.2993 6 6 2.1475 3.5692 1.3037 7 6 3.6705 3.5439 1.1469 8 6 4.0330 2.8131 -0.1479 9 7 3.5048 1.4436 -0.1027 10 6 3.9514 0.6685 -1.2680 11 6 5.4716 0.7787 -1.4016 12 6 5.9297 -0.0169 -2.5967 13 1 5.2087 -0.5477 -3.2007 14 6 7.2693 -0.0664 -2.9196 15 7 8.1472 0.5803 -2.1843 16 14 7.8372 -1.0532 -4.4005 17 1 7.1919 -0.5206 -5.6273 18 1 9.3127 -0.9462 -4.5303 19 1 7.4587 -2.4779 -4.2208 20 1 -0.3633 0.5920 -0.8400 21 1 -0.3633 0.4313 0.9327 22 1 -0.3632 -1.0235 -0.0928 23 1 1.8934 -0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 0.5302 2.1453 1.3677 26 1 2.0303 1.5900 2.1500 27 1 1.8863 4.0507 2.2462 28 1 1.7051 4.1230 0.4758 29 1 4.1151 3.0236 1.9952 30 1 4.0491 4.5653 1.1065 31 1 5.1172 2.7808 -0.2554 32 1 3.5994 3.3417 -0.9968 33 1 3.6730 -0.3772 -1.1372 34 1 3.4782 1.0607 -2.1682 35 1 5.7500 1.8244 -1.5325 36 1 5.9448 0.3866 -0.5015 37 1 9.0895 0.5458 -2.4117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033947161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:05 Heat of formation + Delta-G solvation = -42.865285 kcal Electronic energy + Delta-G solvation = -14612.951108 eV Core-core repulsion = 12388.205315 eV Total energy + Delta-G solvation = -2224.745793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.39440 -35.98686 -34.89829 -34.28935 -30.91100 -30.09230 -26.82513 -25.22821 -24.58657 -21.87335 -21.62013 -20.51395 -18.61981 -16.76880 -16.58582 -16.05991 -15.61359 -15.53840 -15.00293 -14.47679 -14.36495 -13.94817 -13.85700 -13.55868 -13.06961 -12.85168 -12.61263 -12.46348 -12.39442 -12.17036 -11.97116 -11.79029 -11.51188 -11.45705 -11.30826 -10.93230 -10.83930 -10.53065 -9.13937 -8.21684 -6.33349 1.38395 1.41983 1.49967 2.38987 3.05569 3.11315 3.86648 3.90315 4.01406 4.17661 4.34437 4.40190 4.45651 4.50447 4.55897 4.68303 4.70331 4.83715 4.90651 5.00929 5.02685 5.10436 5.11452 5.17580 5.22083 5.30278 5.37426 5.43374 5.44947 5.54137 5.66528 5.78166 6.11012 6.35019 6.42378 6.83090 7.35598 8.90296 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038566 B = 0.007436 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.860153 B = 3764.703807 C = 4367.539383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.081 3.919 4 H 0.027 0.973 5 C -0.105 4.105 6 C -0.116 4.116 7 C -0.111 4.111 8 C 0.051 3.949 9 N -0.544 5.544 10 C 0.079 3.921 11 C 0.033 3.967 12 C -0.548 4.548 13 H 0.058 0.942 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.967 3.033 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.266 1.266 20 H 0.053 0.947 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.019 0.981 33 H 0.066 0.934 34 H 0.010 0.990 35 H -0.002 1.002 36 H -0.009 1.009 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.428 3.396 5.966 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.027 4.027 4 H 0.045 0.955 5 C -0.143 4.143 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.077 4.077 9 N -0.269 5.269 10 C -0.048 4.048 11 C -0.004 4.004 12 C -0.587 4.587 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.791 3.209 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.191 1.191 20 H 0.072 0.928 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.028 0.972 35 H 0.016 0.984 36 H 0.010 0.990 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.069 3.213 6.408 15.790 hybrid contribution 0.660 -0.072 -1.604 1.736 sum -13.409 3.140 4.804 14.586 Atomic orbital electron populations 1.21737 0.93487 1.02243 1.02429 1.21640 0.97188 0.95291 1.01834 1.21798 0.86346 0.96736 0.97802 0.95550 1.21654 1.01105 0.95394 0.96131 1.21584 0.94419 0.96821 1.02526 1.21578 0.97346 0.99678 0.96295 1.22123 0.99578 0.88427 0.97549 1.62025 1.10240 1.13260 1.41351 1.21977 0.96262 0.97291 0.89287 1.19008 0.91033 0.95321 0.95034 1.21605 0.93120 1.31234 1.12693 0.92350 1.25971 0.96882 0.96715 1.00009 1.70103 1.02364 1.43812 1.40821 0.85479 0.77110 0.79234 0.79100 1.19191 1.20602 1.19087 0.92838 0.91099 0.91901 0.91771 0.93342 0.89312 0.91693 0.89721 0.92235 0.91898 0.90572 0.92663 0.96294 0.91520 0.97156 0.98411 0.99028 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.52 71.98 0.69 -2.17 16 2 C -0.12 -3.37 5.13 30.60 0.16 -3.21 16 3 C 0.08 2.45 1.92 44.94 0.09 2.54 16 4 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 5 C -0.11 -2.50 5.09 30.65 0.16 -2.34 16 6 C -0.12 -2.64 6.00 30.67 0.18 -2.45 16 7 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 8 C 0.05 1.91 5.03 86.32 0.43 2.34 16 9 N -0.54 -20.95 4.60 -871.09 -4.01 -24.96 16 10 C 0.08 3.58 4.38 86.30 0.38 3.96 16 11 C 0.03 1.85 4.46 29.85 0.13 1.99 16 12 C -0.55 -32.35 9.11 25.60 0.23 -32.12 16 13 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 14 C 0.00 0.14 5.46 84.66 0.46 0.60 16 15 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 16 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.07 1.20 6.82 -2.39 -0.02 1.18 16 22 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.52 6.17 -2.39 -0.01 1.50 16 25 H 0.09 1.65 6.70 -2.39 -0.02 1.63 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.05 2.43 5.84 -2.39 -0.01 2.41 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 33 H 0.07 2.97 6.38 -2.38 -0.02 2.95 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.00 -0.14 6.19 -2.39 -0.01 -0.15 16 36 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -65.25 282.79 2.40 -62.84 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.00 Total: 6.49 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 3.10 Total: -33.83 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -3.72 Total: -82.62 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.25 2.40 -62.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033947161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.978 kcal (2) G-P(sol) polarization free energy of solvation -65.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds