Wall clock time and date at job start Sun Mar 29 2020 22:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 H 1.09000 * 110.62923 * 51.89559 * 3 2 1 5 5 C 1.55145 * 110.85453 * 288.68569 * 3 2 1 6 6 C 1.54906 * 101.65257 * 205.89683 * 5 3 2 7 7 N 1.47853 * 104.79718 * 37.06582 * 6 5 3 8 8 C 1.46896 * 111.00181 * 213.63700 * 7 6 5 9 9 H 1.09002 * 109.46948 * 63.70677 * 8 7 6 10 10 C 1.52999 * 109.47192 * 183.70800 * 8 7 6 11 11 C 1.53004 * 109.47064 * 303.70662 * 8 7 6 12 12 C 1.50702 * 109.46832 * 174.44169 * 11 8 7 13 13 H 1.07998 * 120.00123 * 4.44238 * 12 11 8 14 14 C 1.37879 * 119.99946 * 184.43450 * 12 11 8 15 15 N 1.31518 * 119.99819 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00052 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47023 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47087 * 120.00432 * 16 14 12 19 19 H 1.48498 * 109.47213 * 240.00336 * 16 14 12 20 20 C 1.47437 * 108.56725 * 335.90917 * 7 6 5 21 21 H 1.09005 * 109.47314 * 300.00388 * 1 2 3 22 22 H 1.09002 * 109.47240 * 60.00032 * 1 2 3 23 23 H 1.08995 * 109.47180 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46873 * 240.00012 * 2 1 3 25 25 H 1.09002 * 109.47240 * 119.99968 * 2 1 3 26 26 H 1.09002 * 110.98817 * 323.98449 * 5 3 2 27 27 H 1.08994 * 110.99246 * 87.76801 * 5 3 2 28 28 H 1.09005 * 110.37358 * 278.24662 * 6 5 3 29 29 H 1.08995 * 110.37685 * 155.89956 * 6 5 3 30 30 H 1.08997 * 109.47096 * 179.97438 * 10 8 7 31 31 H 1.09002 * 109.47275 * 60.00077 * 10 8 7 32 32 H 1.09007 * 109.46815 * 300.00155 * 10 8 7 33 33 H 1.08995 * 109.47285 * 294.44133 * 11 8 7 34 34 H 1.09004 * 109.47188 * 54.44400 * 11 8 7 35 35 H 0.97001 * 119.99868 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.89222 * 120.39408 * 20 7 6 37 37 H 1.09004 * 109.88756 * 241.41747 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5745 2.0144 0.8027 5 6 1.7862 2.1181 -1.3734 6 6 2.8986 3.1957 -1.4024 7 7 4.0638 2.5529 -0.7581 8 6 4.8574 3.5341 -0.0062 9 1 4.2568 3.9397 0.8081 10 6 6.1008 2.8521 0.5679 11 6 5.2833 4.6688 -0.9400 12 6 5.9793 5.7413 -0.1423 13 1 6.1691 5.5938 0.9106 14 6 6.3738 6.9109 -0.7567 15 7 6.1423 7.0907 -2.0388 16 14 7.2372 8.2401 0.2320 17 1 7.3774 7.7958 1.6420 18 1 8.5828 8.4901 -0.3440 19 1 6.4380 9.4907 0.1837 20 6 3.5777 1.4776 0.1258 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.9118 1.4052 -2.1883 27 1 0.7975 2.5757 -1.4066 28 1 2.5899 4.0751 -0.8372 29 1 3.1361 3.4684 -2.4306 30 1 6.6899 3.5803 1.1254 31 1 6.7014 2.4465 -0.2464 32 1 5.7974 2.0437 1.2331 33 1 5.9639 4.2799 -1.6974 34 1 4.4027 5.0903 -1.4248 35 1 6.4196 7.9137 -2.4709 36 1 3.9973 0.5217 -0.1877 37 1 3.8631 1.6875 1.1566 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591016330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:53 Heat of formation + Delta-G solvation = -23.131034 kcal Electronic energy + Delta-G solvation = -14477.703233 eV Core-core repulsion = 12253.813181 eV Total energy + Delta-G solvation = -2223.890052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.00423 -35.22876 -32.94123 -31.51435 -28.89718 -27.92764 -26.55585 -23.72400 -22.33343 -21.28783 -19.85892 -18.91786 -16.49355 -15.59202 -14.94433 -14.52624 -14.26808 -13.67269 -13.55696 -12.91728 -12.66319 -12.30848 -12.19134 -11.89380 -11.57558 -11.35556 -11.12520 -10.88452 -10.84002 -10.60723 -10.46168 -10.38182 -10.32112 -10.22765 -9.88175 -9.12751 -9.02864 -8.31797 -7.58383 -5.96887 -3.98325 3.32314 3.39850 3.43614 4.44848 4.66003 4.75663 4.86875 5.03282 5.30707 5.39052 5.42438 5.56302 5.68805 5.75531 5.87909 5.94250 5.98709 6.03959 6.11455 6.17517 6.19837 6.26267 6.37761 6.39870 6.56009 6.61111 6.74439 6.97609 7.14997 7.63324 7.66012 7.84713 7.91957 8.12984 8.48378 9.08493 9.64818 11.14654 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058208 B = 0.006398 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.916461 B = 4375.155260 C = 4578.127947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.112 4.112 4 H 0.070 0.930 5 C -0.124 4.124 6 C 0.049 3.951 7 N -0.528 5.528 8 C 0.080 3.920 9 H 0.026 0.974 10 C -0.129 4.129 11 C 0.030 3.970 12 C -0.516 4.516 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.046 3.954 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.020 0.980 34 H 0.021 0.979 35 H 0.259 0.741 36 H 0.068 0.932 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 -11.530 3.558 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.131 4.131 4 H 0.088 0.912 5 C -0.162 4.162 6 C -0.079 4.079 7 N -0.252 5.252 8 C -0.028 4.028 9 H 0.044 0.956 10 C -0.187 4.187 11 C -0.007 4.007 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.082 4.082 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.320 -11.603 3.047 14.599 hybrid contribution -0.005 1.234 1.113 1.662 sum -8.325 -10.369 4.160 13.933 Atomic orbital electron populations 1.21776 0.96127 1.01133 1.01806 1.21479 0.95548 0.96007 1.01846 1.22454 0.96559 0.96119 0.97966 0.91155 1.22795 0.98445 0.98214 0.96728 1.22934 0.89026 0.95543 1.00366 1.63678 1.19703 1.11733 1.30102 1.22012 0.93134 0.92290 0.95327 0.95557 1.21752 0.98025 0.99022 0.99899 1.19171 0.96761 0.90563 0.94200 1.21262 1.37544 1.00957 0.95699 0.92643 1.24995 0.96179 0.98327 0.94872 1.69986 1.47458 1.26229 1.09693 0.86575 0.79406 0.81922 0.80334 1.19793 1.21024 1.21101 1.22866 0.92575 0.96577 0.96185 0.92999 0.92626 0.93116 0.91794 0.92236 0.91089 0.91591 0.93508 0.90404 0.91727 0.92766 0.95053 0.96148 0.96056 0.93127 0.91408 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.80 37.16 0.36 -1.06 16 2 C -0.11 -1.19 5.29 -26.73 -0.14 -1.33 16 3 C -0.11 -1.47 2.91 -88.79 -0.26 -1.73 16 4 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.12 -1.72 5.93 -24.59 -0.15 -1.86 16 6 C 0.05 0.88 5.27 -2.29 -0.01 0.87 16 7 N -0.53 -10.08 5.03 -223.29 -1.12 -11.20 16 8 C 0.08 1.74 1.64 -67.71 -0.11 1.62 16 9 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 10 C -0.13 -2.58 8.93 37.16 0.33 -2.25 16 11 C 0.03 0.80 4.38 -27.88 -0.12 0.68 16 12 C -0.52 -14.63 8.49 -34.44 -0.29 -14.92 16 13 H 0.06 1.53 6.94 -52.49 -0.36 1.17 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 16 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 C 0.05 0.72 5.76 -2.84 -0.02 0.70 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.52 7.69 -51.93 -0.40 0.13 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.69 8.01 -51.93 -0.42 0.27 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.95 7.95 -51.93 -0.41 0.53 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.90 7.48 -51.93 -0.39 0.51 16 29 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 30 H 0.06 1.34 6.90 -51.93 -0.36 0.98 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.03 0.53 6.67 -51.93 -0.35 0.19 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.02 0.59 6.67 -51.93 -0.35 0.25 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 37 H 0.05 0.79 6.53 -51.93 -0.34 0.45 16 LS Contribution 287.24 15.07 4.33 4.33 Total: -1.00 -29.70 287.24 -8.29 -38.00 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -6.71 Total: -3.82 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -0.50 Total: -17.73 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.39 Total: -37.56 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.70 -8.29 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591016330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.866 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds