Wall clock time and date at job start Sun Mar 29 2020 22:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 H 1.09000 * 110.62923 * 51.89559 * 3 2 1 5 5 C 1.55145 * 110.85453 * 288.68569 * 3 2 1 6 6 C 1.54906 * 101.65257 * 205.89683 * 5 3 2 7 7 N 1.47853 * 104.79718 * 37.06582 * 6 5 3 8 8 C 1.46896 * 111.00181 * 213.63700 * 7 6 5 9 9 H 1.09002 * 109.46948 * 63.70677 * 8 7 6 10 10 C 1.52999 * 109.47192 * 183.70800 * 8 7 6 11 11 C 1.53004 * 109.47064 * 303.70662 * 8 7 6 12 12 C 1.50702 * 109.46832 * 174.44169 * 11 8 7 13 13 H 1.07998 * 120.00123 * 4.44238 * 12 11 8 14 14 C 1.37879 * 119.99946 * 184.43450 * 12 11 8 15 15 N 1.31518 * 119.99819 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00052 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47023 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47087 * 120.00432 * 16 14 12 19 19 H 1.48498 * 109.47213 * 240.00336 * 16 14 12 20 20 C 1.47437 * 108.56725 * 335.90917 * 7 6 5 21 21 H 1.09005 * 109.47314 * 300.00388 * 1 2 3 22 22 H 1.09002 * 109.47240 * 60.00032 * 1 2 3 23 23 H 1.08995 * 109.47180 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46873 * 240.00012 * 2 1 3 25 25 H 1.09002 * 109.47240 * 119.99968 * 2 1 3 26 26 H 1.09002 * 110.98817 * 323.98449 * 5 3 2 27 27 H 1.08994 * 110.99246 * 87.76801 * 5 3 2 28 28 H 1.09005 * 110.37358 * 278.24662 * 6 5 3 29 29 H 1.08995 * 110.37685 * 155.89956 * 6 5 3 30 30 H 1.08997 * 109.47096 * 179.97438 * 10 8 7 31 31 H 1.09002 * 109.47275 * 60.00077 * 10 8 7 32 32 H 1.09007 * 109.46815 * 300.00155 * 10 8 7 33 33 H 1.08995 * 109.47285 * 294.44133 * 11 8 7 34 34 H 1.09004 * 109.47188 * 54.44400 * 11 8 7 35 35 H 0.97001 * 119.99868 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.89222 * 120.39408 * 20 7 6 37 37 H 1.09004 * 109.88756 * 241.41747 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5745 2.0144 0.8027 5 6 1.7862 2.1181 -1.3734 6 6 2.8986 3.1957 -1.4024 7 7 4.0638 2.5529 -0.7581 8 6 4.8574 3.5341 -0.0062 9 1 4.2568 3.9397 0.8081 10 6 6.1008 2.8521 0.5679 11 6 5.2833 4.6688 -0.9400 12 6 5.9793 5.7413 -0.1423 13 1 6.1691 5.5938 0.9106 14 6 6.3738 6.9109 -0.7567 15 7 6.1423 7.0907 -2.0388 16 14 7.2372 8.2401 0.2320 17 1 7.3774 7.7958 1.6420 18 1 8.5828 8.4901 -0.3440 19 1 6.4380 9.4907 0.1837 20 6 3.5777 1.4776 0.1258 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.9118 1.4052 -2.1883 27 1 0.7975 2.5757 -1.4066 28 1 2.5899 4.0751 -0.8372 29 1 3.1361 3.4684 -2.4306 30 1 6.6899 3.5803 1.1254 31 1 6.7014 2.4465 -0.2464 32 1 5.7974 2.0437 1.2331 33 1 5.9639 4.2799 -1.6974 34 1 4.4027 5.0903 -1.4248 35 1 6.4196 7.9137 -2.4709 36 1 3.9973 0.5217 -0.1877 37 1 3.8631 1.6875 1.1566 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591016330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:52 Heat of formation + Delta-G solvation = -41.261265 kcal Electronic energy + Delta-G solvation = -14478.489419 eV Core-core repulsion = 12253.813181 eV Total energy + Delta-G solvation = -2224.676237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.38405 -36.71483 -34.77120 -33.05256 -30.45902 -29.17168 -28.35932 -25.51758 -23.50564 -22.81337 -21.04529 -20.52048 -18.63191 -17.02403 -16.61377 -16.15839 -15.53480 -15.07342 -14.87742 -14.33811 -14.08386 -14.00337 -13.52293 -13.21367 -13.08664 -12.85042 -12.79716 -12.67995 -12.33992 -12.08553 -11.97646 -11.79629 -11.60811 -11.45794 -11.30646 -11.12374 -11.02929 -10.55474 -9.12473 -8.19400 -6.29583 1.39143 1.39582 1.52723 2.40150 3.13419 3.18713 3.66585 3.80494 3.91631 4.28405 4.37319 4.41960 4.45798 4.54737 4.57168 4.66621 4.73670 4.76202 4.95119 5.01959 5.04867 5.07102 5.15258 5.21993 5.23113 5.29532 5.38393 5.43197 5.48103 5.55902 5.69988 5.79217 6.10897 6.29932 6.40695 6.86833 7.38930 8.93216 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058208 B = 0.006398 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.916461 B = 4375.155260 C = 4578.127947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.104 4.104 4 H 0.070 0.930 5 C -0.111 4.111 6 C 0.044 3.956 7 N -0.541 5.541 8 C 0.090 3.910 9 H 0.018 0.982 10 C -0.121 4.121 11 C 0.040 3.960 12 C -0.533 4.533 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.279 1.279 20 C 0.043 3.957 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.025 0.975 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.063 0.937 33 H -0.013 1.013 34 H -0.006 1.006 35 H 0.263 0.737 36 H 0.081 0.919 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.239 -12.625 5.014 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.123 4.123 4 H 0.088 0.912 5 C -0.149 4.149 6 C -0.084 4.084 7 N -0.265 5.265 8 C -0.018 4.018 9 H 0.036 0.964 10 C -0.179 4.179 11 C 0.003 3.997 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.205 1.205 20 C -0.084 4.084 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.005 0.995 34 H 0.012 0.988 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.872 -12.719 4.513 16.151 hybrid contribution 0.148 1.555 0.610 1.677 sum -8.723 -11.164 5.123 15.066 Atomic orbital electron populations 1.21763 0.94986 1.02108 1.01847 1.21440 0.96471 0.93897 1.02492 1.22421 0.94704 0.97959 0.97226 0.91203 1.22744 0.97500 0.96956 0.97707 1.22913 0.90379 0.96380 0.98678 1.63602 1.20491 1.11660 1.30766 1.21727 0.94336 0.91784 0.93966 0.96390 1.21655 0.96761 0.99487 0.99981 1.18990 0.94688 0.91987 0.94066 1.21635 1.37697 1.01727 0.96134 0.92060 1.25954 0.96861 1.00975 0.95945 1.70126 1.48563 1.27145 1.11585 0.85413 0.78103 0.78513 0.79111 1.18495 1.20390 1.20457 1.22979 0.94494 0.95467 0.95471 0.92877 0.92717 0.91724 0.91533 0.91242 0.90120 0.89868 0.95612 0.92513 0.92820 0.93467 0.91767 0.99494 0.98788 0.92865 0.90113 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.80 71.98 0.71 -1.64 16 2 C -0.11 -1.92 5.29 30.60 0.16 -1.76 16 3 C -0.10 -2.51 2.91 -9.61 -0.03 -2.54 16 4 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 5 C -0.11 -2.93 5.93 31.98 0.19 -2.74 16 6 C 0.04 1.63 5.27 86.77 0.46 2.09 16 7 N -0.54 -20.71 5.03 -860.35 -4.33 -25.03 16 8 C 0.09 3.97 1.64 44.92 0.07 4.05 16 9 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 10 C -0.12 -4.77 8.93 71.98 0.64 -4.13 16 11 C 0.04 2.21 4.38 29.85 0.13 2.34 16 12 C -0.53 -30.90 8.49 25.60 0.22 -30.68 16 13 H 0.06 3.40 6.94 -2.91 -0.02 3.38 16 14 C 0.00 0.01 5.46 84.65 0.46 0.47 16 15 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 16 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 C 0.04 1.28 5.76 86.65 0.50 1.77 16 21 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.05 0.87 7.69 -2.39 -0.02 0.85 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 1.21 8.01 -2.39 -0.02 1.19 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.99 7.95 -2.39 -0.02 1.97 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.03 1.03 7.48 -2.38 -0.02 1.02 16 29 H 0.06 2.27 8.11 -2.39 -0.02 2.25 16 30 H 0.05 2.20 6.90 -2.39 -0.02 2.18 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 2.08 6.67 -2.38 -0.02 2.06 16 33 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H -0.01 -0.37 6.67 -2.38 -0.02 -0.39 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 36 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 37 H 0.05 1.50 6.53 -2.39 -0.02 1.49 16 Total: -1.00 -64.93 287.24 2.49 -62.43 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 1.00 Total: 6.16 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 3.51 Total: -32.76 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -4.04 Total: -82.80 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.93 2.49 -62.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591016330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.174 kcal (2) G-P(sol) polarization free energy of solvation -64.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds