Wall clock time and date at job start Sun Mar 29 2020 21:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00424 * 2 1 4 4 H 1.48496 * 109.47204 * 239.99867 * 3 2 1 5 5 H 1.48499 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47209 * 119.99780 * 3 2 1 7 7 C 1.37877 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99925 * 179.97438 * 7 2 1 9 9 S 1.76206 * 120.00267 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.40244 * 66.45233 * 9 7 2 11 11 O 1.42107 * 106.39691 * 293.53382 * 9 7 2 12 12 C 1.76199 * 107.21835 * 179.97438 * 9 7 2 13 13 C 1.38237 * 119.99920 * 90.00137 * 12 9 7 14 14 C 1.38235 * 119.99712 * 180.02562 * 13 12 9 15 15 C 1.38234 * 120.00220 * 359.94731 * 14 13 12 16 16 C 1.38233 * 120.00037 * 0.28719 * 15 14 13 17 17 C 1.38234 * 120.00031 * 269.97318 * 12 9 7 18 18 H 0.96999 * 119.99413 * 359.97438 * 1 2 3 19 19 H 1.08005 * 120.00088 * 359.96860 * 13 12 9 20 20 H 1.07999 * 119.99770 * 179.97438 * 14 13 12 21 21 H 1.08002 * 119.99744 * 180.02562 * 15 14 13 22 22 H 1.07998 * 120.00395 * 179.72811 * 16 15 14 23 23 H 1.07999 * 119.99990 * 0.02562 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 16 1.1234 -2.7201 0.0005 10 8 0.4516 -2.7955 -1.2493 11 8 0.4509 -2.7950 1.2502 12 6 2.3201 -4.0133 0.0005 13 6 2.7895 -4.5206 1.1977 14 6 3.7288 -5.5348 1.1977 15 6 4.1979 -6.0425 0.0005 16 6 3.7321 -5.5319 -1.1966 17 6 2.7892 -4.5210 -1.1966 18 1 -0.4849 0.8401 0.0004 19 1 2.4231 -4.1239 2.1331 20 1 4.0959 -5.9309 2.1330 21 1 4.9314 -6.8352 0.0006 22 1 4.1017 -5.9254 -2.1319 23 1 2.4224 -4.1247 -2.1319 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000153519.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:14 Heat of formation + Delta-G solvation = -92.955479 kcal Electronic energy + Delta-G solvation = -11820.437107 eV Core-core repulsion = 9531.054166 eV Total energy + Delta-G solvation = -2289.382941 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91463 -37.39469 -36.12909 -35.20542 -32.09319 -31.90642 -28.29049 -24.01558 -23.57128 -20.78775 -19.28182 -18.47700 -17.29384 -16.51900 -16.46256 -15.87700 -15.34702 -15.32461 -14.38188 -14.08381 -13.81349 -13.37874 -12.99623 -12.92141 -12.48966 -12.42957 -12.30627 -12.10529 -11.38187 -11.24390 -10.89025 -10.23778 -9.96009 -8.78045 -7.52707 -0.09000 0.20417 0.37865 1.34230 1.37114 1.50524 2.20653 2.56151 2.63161 3.42637 3.78522 3.80291 4.07505 4.16403 4.28039 4.49338 4.78331 4.80736 5.06795 5.22889 5.32471 5.34627 5.42311 5.84296 5.98571 6.73428 8.19617 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.045288 B = 0.011023 C = 0.010397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.117143 B = 2539.440327 C = 2692.387603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.995 3.005 4 H -0.249 1.249 5 H -0.261 1.261 6 H -0.249 1.249 7 C -1.024 5.024 8 H 0.120 0.880 9 S 2.593 3.407 10 O -1.027 7.027 11 O -1.027 7.027 12 C -0.661 4.661 13 C -0.054 4.054 14 C -0.140 4.140 15 C -0.069 4.069 16 C -0.140 4.140 17 C -0.054 4.054 18 H 0.301 0.699 19 H 0.131 0.869 20 H 0.166 0.834 21 H 0.175 0.825 22 H 0.165 0.835 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.836 -7.491 0.001 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.145 4.145 3 Si 0.812 3.188 4 H -0.172 1.172 5 H -0.184 1.184 6 H -0.172 1.172 7 C -1.157 5.157 8 H 0.138 0.862 9 S 2.783 3.217 10 O -1.024 7.024 11 O -1.024 7.024 12 C -0.750 4.750 13 C -0.073 4.073 14 C -0.158 4.158 15 C -0.086 4.086 16 C -0.158 4.158 17 C -0.073 4.073 18 H 0.111 0.889 19 H 0.149 0.851 20 H 0.183 0.817 21 H 0.193 0.807 22 H 0.183 0.817 23 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.737 -7.581 0.001 12.340 hybrid contribution 0.462 0.893 -0.001 1.005 sum 10.199 -6.689 0.000 12.196 Atomic orbital electron populations 1.69996 1.08791 1.32570 1.40852 1.26108 0.95500 1.05397 0.87453 0.85104 0.78764 0.74056 0.80885 1.17237 1.18445 1.17243 1.30481 1.06838 1.11057 1.67368 0.86199 1.00578 0.74126 0.75014 0.72005 1.93266 1.74560 1.88683 1.45883 1.93267 1.74528 1.88687 1.45903 1.30710 1.22236 1.21160 1.00887 1.21194 0.94659 0.95360 0.96080 1.21707 0.96921 0.96419 1.00776 1.21947 0.97307 0.97949 0.91418 1.21708 0.96889 0.96449 1.00776 1.21192 0.94654 0.95363 0.96081 0.88899 0.85148 0.81697 0.80718 0.81699 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.89 13.19 21.45 0.28 -53.61 14 2 C 0.07 3.85 5.46 84.65 0.46 4.31 14 3 Si 0.99 41.47 29.54 68.60 2.03 43.49 14 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 14 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 14 6 H -0.25 -9.71 7.11 99.48 0.71 -9.01 14 7 C -1.02 -58.06 9.58 67.73 0.65 -57.41 14 8 H 0.12 6.13 7.81 -2.91 -0.02 6.11 14 9 S 2.59 146.32 4.65 -56.49 -0.26 146.06 14 10 O -1.03 -63.28 17.16 -128.00 -2.20 -65.48 14 11 O -1.03 -63.28 17.17 -128.00 -2.20 -65.48 14 12 C -0.66 -29.13 5.81 22.27 0.13 -29.00 14 13 C -0.05 -2.03 9.52 22.27 0.21 -1.82 14 14 C -0.14 -3.75 10.05 22.27 0.22 -3.52 14 15 C -0.07 -1.55 10.05 22.27 0.22 -1.33 14 16 C -0.14 -3.74 10.05 22.27 0.22 -3.52 14 17 C -0.05 -2.03 9.52 22.27 0.21 -1.82 14 18 H 0.30 16.24 8.31 -92.71 -0.77 15.47 14 19 H 0.13 4.96 7.62 -2.91 -0.02 4.94 14 20 H 0.17 3.05 8.06 -2.91 -0.02 3.02 14 21 H 0.18 2.20 8.06 -2.91 -0.02 2.17 14 22 H 0.17 3.05 8.06 -2.91 -0.02 3.02 14 23 H 0.13 4.96 7.62 -2.91 -0.02 4.94 14 Total: -1.00 -78.06 228.60 1.20 -76.86 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.21 Total: 12.27 kcal Atomic # 6 Polarization: -96.45 SS G_CDS: 2.34 Total: -94.12 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.28 Total: -53.61 kcal Atomic # 8 Polarization: -126.57 SS G_CDS: -4.39 Total: -130.96 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 146.32 SS G_CDS: -0.26 Total: 146.06 kcal Total: -78.06 1.20 -76.86 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000153519.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.097 kcal (2) G-P(sol) polarization free energy of solvation -78.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds