Wall clock time and date at job start Sun Mar 29 2020 21:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86799 * 119.99829 * 2 1 4 4 H 1.48509 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47602 * 299.99732 * 3 2 1 6 6 H 1.48501 * 109.47484 * 59.99967 * 3 2 1 7 7 C 1.40044 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99824 * 179.72504 * 7 2 1 9 9 C 1.46375 * 120.00314 * 0.02562 * 7 2 1 10 10 O 1.21687 * 119.99354 * 354.69897 * 9 7 2 11 11 N 1.34769 * 120.00300 * 174.70164 * 9 7 2 12 12 C 1.46967 * 120.59426 * 4.93867 * 11 9 7 13 13 C 1.53807 * 108.39805 * 124.76127 * 12 11 9 14 14 N 1.46961 * 108.58097 * 49.63821 * 13 12 11 15 15 C 1.34777 * 120.59664 * 124.62783 * 14 13 12 16 16 O 1.21284 * 120.00081 * 180.02562 * 15 14 13 17 17 C 1.46968 * 118.81224 * 304.64532 * 14 13 12 18 18 C 1.46961 * 120.59498 * 185.22052 * 11 9 7 19 19 H 0.97003 * 119.99913 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.61163 * 244.54365 * 12 11 9 21 21 H 1.09000 * 109.60823 * 5.05548 * 12 11 9 22 22 H 1.09003 * 109.74310 * 289.84928 * 13 12 11 23 23 H 1.09008 * 109.67544 * 169.38626 * 13 12 11 24 24 H 1.08007 * 119.99763 * 0.02562 * 15 14 13 25 25 H 1.09002 * 109.60796 * 295.48519 * 17 14 13 26 26 H 1.09000 * 109.75136 * 175.05623 * 17 14 13 27 27 H 1.09003 * 109.61214 * 354.94781 * 18 11 9 28 28 H 1.09008 * 109.60988 * 115.28505 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 -0.0039 9 6 1.2751 -2.4805 0.0005 10 8 0.0621 -2.4827 0.0974 11 7 1.9446 -3.6452 -0.1067 12 6 3.4141 -3.6651 -0.1157 13 6 3.8937 -4.6070 1.0016 14 7 3.1675 -5.8793 0.8854 15 6 3.8370 -7.0440 0.7772 16 8 3.2268 -8.0877 0.6814 17 6 1.6979 -5.8590 0.8888 18 6 1.2184 -4.9175 -0.2230 19 1 -0.4850 0.8401 -0.0004 20 1 3.7692 -4.0272 -1.0806 21 1 3.7947 -2.6594 0.0630 22 1 3.6914 -4.1578 1.9740 23 1 4.9639 -4.7857 0.8968 24 1 4.9171 -7.0478 0.7759 25 1 1.3393 -5.4988 1.8531 26 1 1.3152 -6.8634 0.7080 27 1 0.1485 -4.7392 -0.1151 28 1 1.4183 -5.3652 -1.1965 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003336046.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:33 Heat of formation + Delta-G solvation = -59.533331 kcal Electronic energy + Delta-G solvation = -14252.951004 eV Core-core repulsion = 11690.390330 eV Total energy + Delta-G solvation = -2562.560674 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.61324 -37.81900 -35.81310 -33.02733 -32.50691 -31.06421 -27.44461 -26.13328 -23.47466 -22.60676 -20.60461 -18.83841 -17.33113 -16.11578 -15.95769 -15.50438 -14.83534 -14.54156 -14.18693 -14.05931 -13.60776 -12.87816 -12.65429 -11.98263 -11.67760 -11.44684 -11.19116 -11.06070 -10.97216 -10.75558 -10.29112 -10.12766 -9.73542 -8.97009 -8.66843 -7.68788 -7.29135 -6.28684 -4.74684 2.83287 3.06979 3.15034 3.18729 3.24136 4.00995 4.42666 4.48025 4.82605 5.24132 5.29620 5.52687 5.56670 5.61174 5.92156 5.92573 6.03253 6.25631 6.34069 6.50085 6.68820 7.36108 7.46136 7.56069 8.01110 8.21809 8.24249 8.92989 9.31038 10.47484 10.65936 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.060000 B = 0.008187 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.555044 B = 3419.155883 C = 3789.267881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.558 3.442 10 O -0.575 6.575 11 N -0.644 5.644 12 C 0.108 3.892 13 C 0.093 3.907 14 N -0.612 5.612 15 C 0.491 3.509 16 O -0.568 6.568 17 C 0.094 3.906 18 C 0.107 3.893 19 H 0.269 0.731 20 H 0.048 0.952 21 H 0.106 0.894 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.124 0.876 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.485 -4.935 1.255 10.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.092 0.908 9 C 0.364 3.636 10 O -0.458 6.458 11 N -0.383 5.383 12 C -0.018 4.018 13 C -0.031 4.031 14 N -0.347 5.347 15 C 0.261 3.739 16 O -0.445 6.445 17 C -0.029 4.029 18 C -0.018 4.018 19 H 0.080 0.920 20 H 0.066 0.934 21 H 0.124 0.876 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.140 0.860 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.299 -5.373 1.257 9.966 hybrid contribution 0.639 0.891 -0.012 1.096 sum 8.938 -4.482 1.245 10.076 Atomic orbital electron populations 1.70015 1.07122 1.27364 1.34962 1.25736 0.94627 1.00382 0.92534 0.86317 0.80440 0.81721 0.78295 1.18697 1.20146 1.20125 1.20982 0.93547 0.89153 1.54456 0.90799 1.18313 0.86970 0.82159 0.76142 1.90600 1.14405 1.85921 1.54830 1.48199 1.04458 1.05951 1.79667 1.21904 0.83321 1.00542 0.96023 1.22326 0.95702 0.84124 1.00937 1.48626 1.07735 1.07404 1.70972 1.22589 0.93504 0.82340 0.75498 1.90671 1.71772 1.31950 1.50157 1.22055 0.79505 1.01202 1.00162 1.21501 0.99221 0.85108 0.95927 0.92019 0.93370 0.87592 0.90785 0.89744 0.86002 0.91414 0.89062 0.88660 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.30 11.84 55.55 0.66 -21.64 15 2 C 0.09 2.33 5.50 -17.37 -0.10 2.24 15 3 Si 0.91 19.19 29.56 -169.99 -5.02 14.16 15 4 H -0.26 -5.28 7.11 56.52 0.40 -4.87 15 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 7 C -0.54 -14.50 8.86 -35.63 -0.32 -14.82 15 8 H 0.07 1.75 5.66 -52.48 -0.30 1.45 15 9 C 0.56 15.28 7.61 -12.99 -0.10 15.18 15 10 O -0.58 -18.14 14.45 5.20 0.08 -18.06 15 11 N -0.64 -13.98 2.94 -173.87 -0.51 -14.49 15 12 C 0.11 1.79 6.51 -3.37 -0.02 1.77 15 13 C 0.09 1.22 6.67 -3.37 -0.02 1.19 15 14 N -0.61 -8.99 2.95 -177.30 -0.52 -9.51 15 15 C 0.49 6.75 11.81 54.06 0.64 7.39 15 16 O -0.57 -10.24 16.58 5.55 0.09 -10.15 15 17 C 0.09 1.58 6.59 -3.59 -0.02 1.56 15 18 C 0.11 2.09 6.60 -3.60 -0.02 2.06 15 19 H 0.27 7.09 8.29 -40.82 -0.34 6.75 15 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.11 1.80 5.34 -51.93 -0.28 1.52 15 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.08 0.75 7.81 -51.92 -0.41 0.34 15 24 H 0.12 1.11 7.89 -52.48 -0.41 0.70 15 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.09 1.51 7.00 -51.93 -0.36 1.14 15 27 H 0.10 2.05 6.99 -51.93 -0.36 1.69 15 28 H 0.05 0.86 8.14 -51.92 -0.42 0.44 15 LS Contribution 241.37 15.07 3.64 3.64 Total: -1.00 -34.90 241.37 -4.51 -39.40 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -2.95 Total: 0.09 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 0.04 Total: 16.57 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.38 Total: -45.65 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: 0.17 Total: -28.21 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -34.90 -4.51 -39.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003336046.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.132 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds