Wall clock time and date at job start Sun Mar 29 2020 21:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86799 * 119.99829 * 2 1 4 4 H 1.48509 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47602 * 299.99732 * 3 2 1 6 6 H 1.48501 * 109.47484 * 59.99967 * 3 2 1 7 7 C 1.40044 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99824 * 179.72504 * 7 2 1 9 9 C 1.46375 * 120.00314 * 0.02562 * 7 2 1 10 10 O 1.21687 * 119.99354 * 354.69897 * 9 7 2 11 11 N 1.34769 * 120.00300 * 174.70164 * 9 7 2 12 12 C 1.46967 * 120.59426 * 4.93867 * 11 9 7 13 13 C 1.53807 * 108.39805 * 124.76127 * 12 11 9 14 14 N 1.46961 * 108.58097 * 49.63821 * 13 12 11 15 15 C 1.34777 * 120.59664 * 124.62783 * 14 13 12 16 16 O 1.21284 * 120.00081 * 180.02562 * 15 14 13 17 17 C 1.46968 * 118.81224 * 304.64532 * 14 13 12 18 18 C 1.46961 * 120.59498 * 185.22052 * 11 9 7 19 19 H 0.97003 * 119.99913 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.61163 * 244.54365 * 12 11 9 21 21 H 1.09000 * 109.60823 * 5.05548 * 12 11 9 22 22 H 1.09003 * 109.74310 * 289.84928 * 13 12 11 23 23 H 1.09008 * 109.67544 * 169.38626 * 13 12 11 24 24 H 1.08007 * 119.99763 * 0.02562 * 15 14 13 25 25 H 1.09002 * 109.60796 * 295.48519 * 17 14 13 26 26 H 1.09000 * 109.75136 * 175.05623 * 17 14 13 27 27 H 1.09003 * 109.61214 * 354.94781 * 18 11 9 28 28 H 1.09008 * 109.60988 * 115.28505 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 -0.0039 9 6 1.2751 -2.4805 0.0005 10 8 0.0621 -2.4827 0.0974 11 7 1.9446 -3.6452 -0.1067 12 6 3.4141 -3.6651 -0.1157 13 6 3.8937 -4.6070 1.0016 14 7 3.1675 -5.8793 0.8854 15 6 3.8370 -7.0440 0.7772 16 8 3.2268 -8.0877 0.6814 17 6 1.6979 -5.8590 0.8888 18 6 1.2184 -4.9175 -0.2230 19 1 -0.4850 0.8401 -0.0004 20 1 3.7692 -4.0272 -1.0806 21 1 3.7947 -2.6594 0.0630 22 1 3.6914 -4.1578 1.9740 23 1 4.9639 -4.7857 0.8968 24 1 4.9171 -7.0478 0.7759 25 1 1.3393 -5.4988 1.8531 26 1 1.3152 -6.8634 0.7080 27 1 0.1485 -4.7392 -0.1151 28 1 1.4183 -5.3652 -1.1965 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003336046.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:33 Heat of formation + Delta-G solvation = -86.332213 kcal Electronic energy + Delta-G solvation = -14254.113091 eV Core-core repulsion = 11690.390330 eV Total energy + Delta-G solvation = -2563.722760 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.92597 -39.46930 -37.44169 -34.78767 -34.38589 -32.47264 -29.09746 -27.87594 -24.92575 -23.95565 -22.13652 -20.41341 -18.81606 -17.93453 -17.31610 -17.02858 -16.18063 -16.17259 -15.81580 -15.66425 -14.84133 -14.50042 -14.18332 -13.55927 -13.41112 -13.11961 -12.81189 -12.76312 -12.29562 -12.25860 -11.96510 -11.91077 -10.94943 -10.92636 -10.04810 -9.78396 -8.98938 -8.28531 -6.83322 1.42820 1.43618 1.61149 1.76462 2.07271 2.26881 2.47140 2.85500 3.59910 3.80815 3.99813 4.08766 4.26197 4.43624 4.52364 4.59898 4.72109 4.80806 4.87412 5.13108 5.36808 5.44704 5.73342 6.13766 6.32435 6.50030 6.89078 7.15124 7.40968 8.46013 8.67864 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.060000 B = 0.008187 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.555044 B = 3419.155883 C = 3789.267881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.027 3.973 3 Si 0.997 3.003 4 H -0.237 1.237 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.564 4.564 8 H 0.103 0.897 9 C 0.538 3.462 10 O -0.634 6.634 11 N -0.648 5.648 12 C 0.099 3.901 13 C 0.102 3.898 14 N -0.616 5.616 15 C 0.495 3.505 16 O -0.613 6.613 17 C 0.106 3.894 18 C 0.110 3.890 19 H 0.273 0.727 20 H 0.066 0.934 21 H 0.103 0.897 22 H 0.067 0.933 23 H 0.145 0.855 24 H 0.189 0.811 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.192 -4.734 1.394 14.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.160 1.160 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.600 4.600 8 H 0.121 0.879 9 C 0.345 3.655 10 O -0.522 6.522 11 N -0.385 5.385 12 C -0.025 4.025 13 C -0.021 4.021 14 N -0.350 5.350 15 C 0.268 3.732 16 O -0.493 6.493 17 C -0.018 4.018 18 C -0.015 4.015 19 H 0.083 0.917 20 H 0.084 0.916 21 H 0.121 0.879 22 H 0.086 0.914 23 H 0.163 0.837 24 H 0.204 0.796 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.088 -5.216 1.395 13.239 hybrid contribution -0.498 0.734 -0.085 0.891 sum 11.590 -4.482 1.311 12.495 Atomic orbital electron populations 1.70209 1.09768 1.28845 1.36711 1.27039 0.95442 1.05147 0.91181 0.84973 0.79848 0.75348 0.78162 1.15986 1.19886 1.19824 1.21548 0.95077 0.89277 1.54123 0.87920 1.18793 0.86606 0.84236 0.75887 1.90550 1.16933 1.87306 1.57382 1.48076 1.06927 1.05065 1.78399 1.22218 0.79823 1.01809 0.98631 1.22390 0.98535 0.82314 0.98834 1.48762 1.06453 1.08758 1.71031 1.23687 0.95462 0.80762 0.73291 1.90670 1.73054 1.33626 1.51976 1.21700 0.81874 1.00061 0.98213 1.21489 0.97427 0.84997 0.97595 0.91722 0.91570 0.87887 0.91441 0.83743 0.79566 0.92537 0.88968 0.92048 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.76 11.84 21.83 0.26 -49.50 15 2 C 0.03 1.43 5.50 85.30 0.47 1.90 15 3 Si 1.00 38.85 29.56 68.60 2.03 40.88 15 4 H -0.24 -8.17 7.11 99.48 0.71 -7.46 15 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 15 6 H -0.27 -10.42 7.11 99.48 0.71 -9.72 15 7 C -0.56 -30.05 8.86 24.83 0.22 -29.83 15 8 H 0.10 4.67 5.66 -2.91 -0.02 4.66 15 9 C 0.54 30.37 7.61 86.36 0.66 31.03 15 10 O -0.63 -42.29 14.45 -4.31 -0.06 -42.35 15 11 N -0.65 -28.23 2.94 -822.24 -2.42 -30.65 15 12 C 0.10 3.02 6.51 86.56 0.56 3.58 15 13 C 0.10 2.24 6.67 86.56 0.58 2.81 15 14 N -0.62 -16.17 2.95 -833.24 -2.46 -18.63 15 15 C 0.50 11.55 11.81 129.79 1.53 13.09 15 16 O -0.61 -20.67 16.58 -3.04 -0.05 -20.72 15 17 C 0.11 3.53 6.59 86.41 0.57 4.10 15 18 C 0.11 4.38 6.60 86.42 0.57 4.95 15 19 H 0.27 14.92 8.29 -92.71 -0.77 14.15 15 20 H 0.07 1.81 8.14 -2.38 -0.02 1.79 15 21 H 0.10 3.21 5.34 -2.39 -0.01 3.20 15 22 H 0.07 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.14 1.53 7.81 -2.38 -0.02 1.51 15 24 H 0.19 2.07 7.89 -2.91 -0.02 2.05 15 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.09 3.05 7.00 -2.39 -0.02 3.04 15 27 H 0.06 2.84 6.99 -2.39 -0.02 2.83 15 28 H 0.06 2.09 8.14 -2.38 -0.02 2.07 15 Total: -1.00 -81.04 241.37 3.63 -77.40 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.17 Total: 11.93 kcal Atomic # 6 Polarization: 26.47 SS G_CDS: 5.16 Total: 31.63 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -4.61 Total: -98.77 kcal Atomic # 8 Polarization: -62.95 SS G_CDS: -0.11 Total: -63.06 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -81.04 3.63 -77.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003336046.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.928 kcal (2) G-P(sol) polarization free energy of solvation -81.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds