Wall clock time and date at job start Sun Mar 29 2020 21:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53719 * 2 1 4 4 N 1.47309 * 110.59850 * 237.16427 * 2 1 3 5 5 C 1.34861 * 106.44087 * 241.52072 * 4 2 1 6 6 O 1.21544 * 123.72820 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.49937 * 359.87131 * 5 4 2 8 8 C 1.46507 * 124.17730 * 180.12117 * 7 5 4 9 9 C 1.50699 * 109.46910 * 269.95613 * 8 7 5 10 10 H 1.07995 * 119.99974 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99621 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00148 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99806 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47322 * 89.99903 * 13 11 9 15 15 H 1.48499 * 109.47116 * 209.99988 * 13 11 9 16 16 H 1.48503 * 109.47438 * 330.00411 * 13 11 9 17 17 C 1.34767 * 111.64639 * 0.08368 * 7 5 4 18 18 O 1.21237 * 127.15808 * 180.02562 * 17 7 5 19 19 H 1.09001 * 109.47002 * 59.29893 * 1 2 3 20 20 H 1.08993 * 109.46955 * 179.30331 * 1 2 3 21 21 H 1.09000 * 109.47050 * 299.30160 * 1 2 3 22 22 H 1.09008 * 109.47157 * 60.69509 * 3 2 1 23 23 H 1.08991 * 109.47304 * 180.70259 * 3 2 1 24 24 H 1.09003 * 109.47101 * 300.70319 * 3 2 1 25 25 H 0.97001 * 126.68625 * 61.45329 * 4 2 1 26 26 H 1.08999 * 109.46913 * 29.95392 * 8 7 5 27 27 H 1.08995 * 109.47189 * 149.95687 * 8 7 5 28 28 H 0.97001 * 120.00118 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 2.0483 -0.7477 -1.1586 5 6 2.7600 -1.7791 -0.6600 6 8 3.3291 -2.6023 -1.3497 7 7 2.7715 -1.7938 0.6777 8 6 3.4686 -2.7992 1.4837 9 6 2.5393 -3.9524 1.7621 10 1 1.5305 -3.9381 1.3768 11 6 2.9773 -5.0263 2.5077 12 7 4.2062 -5.0444 2.9756 13 14 1.8257 -6.4561 2.8522 14 1 1.9575 -7.4688 1.7740 15 1 2.1783 -7.0727 4.1562 16 1 0.4255 -5.9635 2.9000 17 6 2.0633 -0.7692 1.1923 18 8 1.8892 -0.5152 2.3650 19 1 -0.3633 0.5247 -0.8836 20 1 -0.3633 -1.0275 -0.0125 21 1 -0.3633 0.5029 0.8962 22 1 1.7232 1.9495 0.8962 23 1 3.1565 1.4125 -0.0126 24 1 1.7029 1.9571 -0.8836 25 1 1.9042 -0.5386 -2.0948 26 1 4.3417 -3.1594 0.9396 27 1 3.7863 -2.3530 2.4260 28 1 4.5143 -5.7997 3.5005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003356941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:49 Heat of formation + Delta-G solvation = -51.671802 kcal Electronic energy + Delta-G solvation = -14459.477854 eV Core-core repulsion = 11897.258082 eV Total energy + Delta-G solvation = -2562.219772 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.78394 -37.87994 -36.06973 -34.72646 -32.65444 -30.99999 -27.84023 -27.50802 -24.11721 -23.07264 -20.95557 -19.74115 -17.33858 -16.84890 -15.73000 -15.55821 -15.19400 -14.91392 -14.23600 -13.81299 -13.52714 -13.21164 -12.50231 -12.34740 -12.22737 -12.12682 -11.55550 -11.52262 -11.11288 -10.74908 -10.40910 -10.01279 -9.86989 -9.42100 -9.14267 -8.56075 -8.50810 -6.13530 -4.18710 2.25602 2.97871 3.30236 3.35073 3.39170 3.64283 3.79208 4.36647 4.43895 4.71640 4.89428 5.22726 5.45359 5.54452 5.62164 5.64573 5.91213 6.01351 6.09385 6.61249 7.05969 7.20578 7.23594 7.79438 7.98014 8.03613 8.12159 8.74377 8.88520 9.46093 10.95995 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.040875 B = 0.009773 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.852599 B = 2864.388712 C = 3003.238781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.112 3.888 3 C -0.142 4.142 4 N -0.735 5.735 5 C 0.700 3.300 6 O -0.542 6.542 7 N -0.556 5.556 8 C 0.248 3.752 9 C -0.534 4.534 10 H 0.060 0.940 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.905 3.095 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.273 1.273 17 C 0.526 3.474 18 O -0.473 6.473 19 H 0.071 0.929 20 H 0.067 0.933 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.430 0.570 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 11.643 -6.430 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.021 3.979 3 C -0.201 4.201 4 N -0.401 5.401 5 C 0.401 3.599 6 O -0.415 6.415 7 N -0.300 5.300 8 C 0.131 3.869 9 C -0.573 4.573 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.732 3.268 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.198 1.198 17 C 0.311 3.689 18 O -0.343 6.343 19 H 0.090 0.910 20 H 0.086 0.914 21 H 0.098 0.902 22 H 0.099 0.901 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.273 0.727 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.619 11.111 -5.936 13.794 hybrid contribution -0.629 -0.785 -0.235 1.033 sum -6.248 10.326 -6.171 13.555 Atomic orbital electron populations 1.21944 0.91035 1.03722 1.03477 1.21448 0.96747 0.94043 0.85705 1.21941 1.01979 0.92559 1.03596 1.45774 1.56339 1.29731 1.08285 1.16079 0.79586 0.81654 0.82591 1.90954 1.48310 1.40907 1.61366 1.46825 1.47887 1.28048 1.07216 1.19606 0.92829 0.84461 0.90044 1.21251 0.98856 1.03040 1.34135 0.92224 1.24900 0.95442 0.98324 0.95116 1.69919 1.16077 1.31542 1.35390 0.86380 0.80795 0.81885 0.77714 1.20358 1.20892 1.19788 1.20555 0.77955 0.80948 0.89404 1.90724 1.57095 1.69786 1.16724 0.90978 0.91361 0.90164 0.90144 0.91593 0.90928 0.72711 0.92821 0.92994 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.98 37.16 0.33 -1.31 15 2 C 0.11 1.57 1.37 -132.09 -0.18 1.38 15 3 C -0.14 -1.51 8.98 37.16 0.33 -1.18 15 4 N -0.74 -10.84 5.93 -52.85 -0.31 -11.15 15 5 C 0.70 14.65 8.63 -87.72 -0.76 13.89 15 6 O -0.54 -13.29 17.48 5.33 0.09 -13.20 15 7 N -0.56 -12.65 2.59 -121.92 -0.32 -12.96 15 8 C 0.25 6.71 5.45 -5.19 -0.03 6.68 15 9 C -0.53 -15.56 9.39 -34.44 -0.32 -15.88 15 10 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 11 C 0.07 1.89 5.46 -17.82 -0.10 1.79 15 12 N -0.89 -26.55 13.29 55.43 0.74 -25.82 15 13 Si 0.91 22.08 29.54 -169.99 -5.02 17.06 15 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 17 C 0.53 10.50 6.98 -10.56 -0.07 10.43 15 18 O -0.47 -10.58 17.76 5.59 0.10 -10.48 15 19 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.08 0.81 8.14 -51.92 -0.42 0.39 15 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 15 25 H 0.43 4.82 8.96 -40.82 -0.37 4.45 15 26 H 0.05 1.54 7.86 -51.93 -0.41 1.13 15 27 H 0.05 1.46 8.00 -51.93 -0.42 1.05 15 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 252.94 15.07 3.81 3.81 Total: -1.00 -33.75 252.94 -4.97 -38.72 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -3.27 Total: -1.78 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: -0.79 Total: 15.81 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.11 Total: -49.93 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.19 Total: -23.68 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.75 -4.97 -38.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003356941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.953 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds